sdcbp syndecan binding protein (syntenin) [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: sdcbpprovided by ZNC
Official Full Name: syndecan binding protein (syntenin)provided by ZNC
Primary source: ZFIN:ZDB-GENE-081104-57
See related: Ensembl:ENSDARG00000030097 AllianceGenome:ZFIN:ZDB-GENE-081104-57
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: sb:eu862; si:dkey-235k4.1
Summary: Enables syndecan binding activity. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human SDCBP (syndecan binding protein). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 7

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (58259455..58269813, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (57957015..57967373, complement)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data show that epiboly relies on the molecular networking of protein arginine methyltransferase 7 (Prmt7) by facilitating syntenin, which acts as a regulator for cytoskeleton.
Title: Prmt7 regulates epiboly and gastrulation cell movements by facilitating syntenin.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables syndecan binding	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within proteolysis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: syntenin-1

Names: syntenin-b

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_214798.2 → NP_999963.2 syntenin-1

Status: VALIDATED

Source sequence(s)

CR354540

UniProtKB/TrEMBL

A0A8M1PFQ7, F1QFG9

Related

ENSDARP00000050076.3, ENSDART00000050077.4

Conserved Domains (1) summary

cd00992
Location:121 → 200

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...