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    dnajc28 DnaJ (Hsp40) homolog, subfamily C, member 28 [ Danio rerio (zebrafish) ]

    Gene ID: 550341, updated on 12-Sep-2024

    Summary

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    Official Symbol
    dnajc28provided by ZNC
    Official Full Name
    DnaJ (Hsp40) homolog, subfamily C, member 28provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-130
    See related
    Ensembl:ENSDARG00000018181 AllianceGenome:ZFIN:ZDB-GENE-050417-130
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:112068
    Summary
    Predicted to be involved in Golgi organization; Golgi vesicle prefusion complex stabilization; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be part of Golgi transport complex. Orthologous to human DNAJC28 (DnaJ heat shock protein family (Hsp40) member C28). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (35872698..35875051, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (36063513..36065866, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene SON DNA and RNA binding protein a Neighboring gene regulator of calcineurin 1a Neighboring gene mab-21-like 3 Neighboring gene ATPase Na+/K+ transporting subunit alpha 1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Functional characterization of Atlantic salmon (Salmo salar L.) PepT2 transporters. Vacca F, et al. J Physiol, 2022 May. PMID 35413133, Free PMC Article
    2. olig1 Expression identifies developing oligodendrocytes in zebrafish and requires hedgehog and notch signaling. Schebesta M, et al. Dev Dyn, 2009 Apr. PMID 19253391
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    dnaJ homolog subfamily C member 28

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017648.1 → NP_001017648.1  dnaJ homolog subfamily C member 28

      See identical proteins and their annotated locations for NP_001017648.1

      Status: PROVISIONAL

      Source sequence(s)
      BC093182
      UniProtKB/TrEMBL
      Q567G4
      Related
      ENSDARP00000017551.5, ENSDART00000013432.7
      Conserved Domains (2) summary
      smart00271
      Location:42 → 91
      DnaJ; DnaJ molecular chaperone homology domain
      pfam09350
      Location:197 → 265
      DUF1992; Domain of unknown function (DUF1992)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      35872698..35875051 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394761.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      230068..232421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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