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DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 [ Homo sapiens (human) ]

Gene ID: 54943, updated on 21-Dec-2019

Summary

Official Symbol
DNAJC28provided by HGNC
Official Full Name
DnaJ heat shock protein family (Hsp40) member C28provided by HGNC
Primary source
HGNC:HGNC:1297
See related
Ensembl:ENSG00000177692
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C21orf55; C21orf78
Summary
This gene encodes a member of the DnaJ heat shock protein family. The encoded protein, which contains a conserved N-terminal DnaJ domain, is thought to play a role in protein folding or act as a molecular chaperone protein. [provided by RefSeq, Oct 2016]
Expression
Broad expression in testis (RPKM 4.6), thyroid (RPKM 2.4) and 23 other tissues See more
Orthologs

Genomic context

See DNAJC28 in Genome Data Viewer
Location:
21q22.11
Exon count:
3
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (33488055..33491723, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (34860238..34864023, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene interferon gamma receptor 2 Neighboring gene transmembrane protein 50B Neighboring gene ribosomal protein S5 pseudogene 3 Neighboring gene phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase Neighboring gene basic transcription factor 3 pseudogene 6 Neighboring gene microRNA 6501 Neighboring gene SON DNA and RNA binding protein

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi vesicle prefusion complex stabilization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
retrograde vesicle-mediated transport, Golgi to ER IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
Golgi transport complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
dnaJ homolog subfamily C member 28
Names
DnaJ (Hsp40) homolog, subfamily C, member 28

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_051991.1 RefSeqGene

    Range
    5001..8669
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001040192.2NP_001035282.1  dnaJ homolog subfamily C member 28

    See identical proteins and their annotated locations for NP_001035282.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2, and 3 encode the same protein.
    Source sequence(s)
    AI825667, BC029509, CB241459, HY130099
    Consensus CDS
    CCDS13626.1
    UniProtKB/Swiss-Prot
    Q9NX36
    Related
    ENSP00000371373.3, ENST00000381947.3
    Conserved Domains (3) summary
    cd06257
    Location:51104
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    PLN03085
    Location:200338
    PLN03085; nucleobase:cation symporter-1; Provisional
    pfam09350
    Location:203271
    DUF1992; Domain of unknown function (DUF1992)
  2. NM_001320746.2NP_001307675.1  dnaJ homolog subfamily C member 28

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, and 3 encode the same protein.
    Source sequence(s)
    AP000302
    Consensus CDS
    CCDS13626.1
    UniProtKB/Swiss-Prot
    Q9NX36
    Conserved Domains (3) summary
    cd06257
    Location:51104
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    PLN03085
    Location:200338
    PLN03085; nucleobase:cation symporter-1; Provisional
    pfam09350
    Location:203271
    DUF1992; Domain of unknown function (DUF1992)
  3. NM_017833.4NP_060303.2  dnaJ homolog subfamily C member 28

    See identical proteins and their annotated locations for NP_060303.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1, 2, and 3 encode the same protein.
    Source sequence(s)
    AI825667, AK000468, CB241459, DA249316
    Consensus CDS
    CCDS13626.1
    UniProtKB/Swiss-Prot
    Q9NX36
    Related
    ENSP00000320303.3, ENST00000314399.3
    Conserved Domains (3) summary
    cd06257
    Location:51104
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    PLN03085
    Location:200338
    PLN03085; nucleobase:cation symporter-1; Provisional
    pfam09350
    Location:203271
    DUF1992; Domain of unknown function (DUF1992)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    33488055..33491723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NW_003315970.2 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    92184..95853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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