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    TRUB1 TruB pseudouridine synthase family member 1 [ Gallus gallus (chicken) ]

    Gene ID: 423914, updated on 5-Mar-2024

    Summary

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    Symbol
    TRUB1provided by CGNC
    Full Name
    TruB pseudouridine synthase family member 1provided by CGNC
    Primary source
    CGNC:6919
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (28848071..28874797)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (28739020..28765756)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene actin binding LIM protein 1 Neighboring gene uncharacterized LOC124418061 Neighboring gene FHF complex subunit HOOK interacting protein 2A Neighboring gene uncharacterized LOC101751655 Neighboring gene microRNA 1815

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pseudouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable tRNA pseudouridine synthase 1
    Names
    TruB pseudouridine (psi) synthase family member 1
    TruB pseudouridine (psi) synthase homolog 1
    XP_040530103.1
    XP_421776.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      28848071..28874797
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_421776.8 → XP_421776.1  probable tRNA pseudouridine synthase 1

      UniProtKB/TrEMBL
      E1BRM1
      Conserved Domains (1) summary
      cl00130
      Location:19 → 277
      PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      28739020..28765756
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040674169.2 → XP_040530103.1  probable tRNA pseudouridine synthase 1

      Conserved Domains (1) summary
      cl00130
      Location:19 → 277
      PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)
    Nucleotide Protein Strain
    Heading Accession and Version

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