fgf11a fibroblast growth factor 11a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: fgf11aprovided by ZNC
Official Full Name: fibroblast growth factor 11aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-050221-5
See related: Ensembl:ENSDARG00000069662 AllianceGenome:ZFIN:ZDB-GENE-050221-5
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fgf11
Summary: Predicted to enable sodium channel regulator activity. Predicted to be involved in regulation of voltage-gated sodium channel activity. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and nucleus. Is expressed in kidney. Orthologous to human FGF11 (fibroblast growth factor 11). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (22398266..22526079)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (22127067..22255590)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

Z8889 (e-PCR)
- UniSTS:7390

G45660 (e-PCR)
- UniSTS:106462

G39862 (e-PCR)
- UniSTS:35046

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables growth factor activity	IEA Inferred from Electronic Annotation more info
enables sodium channel regulator activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in regulation of voltage-gated sodium channel activity	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in extracellular region	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: fibroblast growth factor 11; fibroblast growth factor 11a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001012380.1 → NP_001012380.1 fibroblast growth factor 11a

See identical proteins and their annotated locations for NP_001012380.1

Status: PROVISIONAL

Source sequence(s)

AB195617

UniProtKB/TrEMBL

Q5TKR4

Conserved Domains (1) summary

pfam00167
Location:72 → 197

FGF; Fibroblast growth factor

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007118.7 Reference GRCz11 Primary Assembly

Range

22398266..22526079

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021477520.1 → XP_021333195.1 fibroblast growth factor 11 isoform X1

UniProtKB/TrEMBL

A0A8M9QGZ2

Related

ENSDARP00000144353.1, ENSDART00000174483.2

Conserved Domains (1) summary

pfam00167
Location:72 → 197

FGF; Fibroblast growth factor