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    FOCAD focadhesin [ Canis lupus familiaris (dog) ]

    Gene ID: 481557, updated on 5-Mar-2024

    Summary

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    Official Symbol
    FOCADprovided by VGNC
    Official Full Name
    focadhesinprovided by VGNC
    Primary source
    VGNC:VGNC:40938
    See related
    Ensembl:ENSCAFG00845015191
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    44
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (41207527..41519558)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (38928212..39240145)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (40322038..40635712)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (39898503..40211709)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (39681955..40000022)

    Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111098065 Neighboring gene MLLT3 super elongation complex subunit Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene microRNA mir-491 Neighboring gene small nucleolar RNA SNORA30/SNORA37 family Neighboring gene uncharacterized LOC119873919 Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC111097941 Neighboring gene 3-hydroxyacyl-CoA dehydratase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • KIAA1797

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    focadhesin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051815.1 Reference ROS_Cfam_1.0

      Range
      41207527..41519558
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038681854.1 → XP_038537782.1  focadhesin isoform X1

      UniProtKB/TrEMBL
      A0A8C0TBP3
      Related
      ENSCAFP00845021545.1, ENSCAFT00845027371.1
      Conserved Domains (2) summary
      pfam11229
      Location:1218 → 1806
      Focadhesin
      pfam12530
      Location:490 → 714
      DUF3730; Protein of unknown function (DUF3730)

    2. XM_038681855.1 → XP_038537783.1  focadhesin isoform X2

      UniProtKB/TrEMBL
      A0A8C0TBP3
      Related
      ENSCAFP00845021594.1, ENSCAFT00845027445.1
      Conserved Domains (2) summary
      pfam11229
      Location:1217 → 1805
      Focadhesin
      pfam12530
      Location:490 → 714
      DUF3730; Protein of unknown function (DUF3730)

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049271.1 Alternate UMICH_Zoey_3.1

      Range
      39898503..40211709
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038490403.1 → XP_038346331.1  focadhesin isoform X1

    2. XM_038490404.1 → XP_038346332.1  focadhesin isoform X2

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

      Range
      39681955..40000022
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038616372.1 → XP_038472300.1  focadhesin isoform X1

    2. XM_038616373.1 → XP_038472301.1  focadhesin isoform X2

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

      Range
      40322038..40635712
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038552511.1 → XP_038408439.1  focadhesin isoform X1

      UniProtKB/TrEMBL
      A0A8C0T9M2, A0A8C0TBP3

    2. XM_038552512.1 → XP_038408440.1  focadhesin isoform X2

      UniProtKB/TrEMBL
      A0A8C0KLM1, A0A8C0TBP3

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      38928212..39240145
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005626671.4 → XP_005626728.1  focadhesin isoform X1

      See identical proteins and their annotated locations for XP_005626728.1

      UniProtKB/TrEMBL
      A0A8C0TBP3
      Conserved Domains (2) summary
      pfam11229
      Location:1218 → 1806
      DUF3028; Protein of unknown function (DUF3028)
      pfam12530
      Location:490 → 714
      DUF3730; Protein of unknown function (DUF3730)

    2. XM_538678.7 → XP_538678.2  focadhesin isoform X2

      UniProtKB/TrEMBL
      A0A8C0TBP3
      Conserved Domains (2) summary
      pfam11229
      Location:1217 → 1805
      DUF3028; Protein of unknown function (DUF3028)
      pfam12530
      Location:490 → 714
      DUF3730; Protein of unknown function (DUF3730)
    Nucleotide Protein
    Heading Accession and Version

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