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    SCAND3 SCAN domain containing 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100397601, updated on 8-Mar-2024

    Summary

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    Gene symbol
    SCAND3
    Gene description
    SCAN domain containing 3
    See related
    Ensembl:ENSCJAG00000018566
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Also known as
    ZBED9
    Orthologs
    human all
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    Genomic context

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    See SCAND3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 4 NC_071445.1 (1031014..1045695)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 4 NC_048386.1 (693137..712011)

    Chromosome 4 - NC_071445.1Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene glutathione peroxidase 5 Neighboring gene transfer RNA arginine (anticodon UCG) Neighboring gene transfer RNA isoleucine (anticodon UAU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA integration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SCAN domain-containing protein 3
    Names
    zinc finger BED-type containing 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071445.1 Reference mCalJa1.2.pat.X

      Range
      1031014..1045695
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035294689.2 → XP_035150580.1  SCAN domain-containing protein 3 isoform X2

      Conserved Domains (2) summary
      smart00431
      Location:48 → 160
      SCAN; leucine rich region
      pfam14291
      Location:863 → 979
      DUF4371; Domain of unknown function (DUF4371)

    2. XM_002746080.5 → XP_002746126.1  SCAN domain-containing protein 3 isoform X1

      See identical proteins and their annotated locations for XP_002746126.1

      UniProtKB/TrEMBL
      F7IK96, U3E3V3
      Related
      ENSCJAP00000034493.2
      Conserved Domains (3) summary
      smart00431
      Location:48 → 160
      SCAN; leucine rich region
      pfam05699
      Location:1249 → 1296
      Dimer_Tnp_hAT; hAT family C-terminal dimerisation region
      cl21549
      Location:376 → 484
      rve; Integrase core domain

    3. XM_035294690.2 → XP_035150581.1  SCAN domain-containing protein 3 isoform X3

      Conserved Domains (2) summary
      pfam05699
      Location:1136 → 1183
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      pfam14291
      Location:750 → 866
      DUF4371; Domain of unknown function (DUF4371)
    Nucleotide Protein
    Heading Accession and Version

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