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    hyi hydroxypyruvate isomerase (putative) [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100135187, updated on 8-Mar-2024

    Summary

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    Official Symbol
    hyiprovided by Xenbase
    Official Full Name
    hydroxypyruvate isomerase (putative)provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5847279
    See related
    Ensembl:ENSXETG00000002253
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ht036
    Orthologs
    human all
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    Genomic context

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    See hyi in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (88652641..88662697, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (74933124..74943017)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 8 Neighboring gene SZT2, KICSTOR complex subunit Neighboring gene uncharacterized LOC116410215 Neighboring gene protein tyrosine phosphatase receptor type F

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables hydroxypyruvate isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative hydroxypyruvate isomerase
    Names
    hydroxypyruvate isomerase homolog
    NP_001107362.1
    XP_012816017.1
    XP_012816018.1
    XP_012816019.1
    XP_031755673.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113890.1 → NP_001107362.1  putative hydroxypyruvate isomerase

      See identical proteins and their annotated locations for NP_001107362.1

      Status: PROVISIONAL

      Source sequence(s)
      BC157213
      UniProtKB/TrEMBL
      A0A803JHM5, A9ULD4
      Conserved Domains (1) summary
      TIGR03234
      Location:1 → 261
      OH-pyruv-isom; hydroxypyruvate isomerase

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      88652641..88662697 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012960564.3 → XP_012816018.1  putative hydroxypyruvate isomerase isoform X3

      See identical proteins and their annotated locations for XP_012816018.1

      UniProtKB/TrEMBL
      A0A803JHM5, A9ULD4
      Conserved Domains (1) summary
      TIGR03234
      Location:1 → 261
      OH-pyruv-isom; hydroxypyruvate isomerase

    2. XM_031899813.1 → XP_031755673.1  putative hydroxypyruvate isomerase isoform X2

      UniProtKB/TrEMBL
      A0A8J1JCR1
      Conserved Domains (1) summary
      TIGR03234
      Location:73 → 262
      OH-pyruv-isom; hydroxypyruvate isomerase

    3. XM_012960563.3 → XP_012816017.1  putative hydroxypyruvate isomerase isoform X1

      UniProtKB/TrEMBL
      A0A8J0SKJ0
      Conserved Domains (1) summary
      pfam01261
      Location:72 → 235
      AP_endonuc_2; Xylose isomerase-like TIM barrel

    4. XM_012960565.2 → XP_012816019.1  putative hydroxypyruvate isomerase isoform X3

      See identical proteins and their annotated locations for XP_012816019.1

      UniProtKB/TrEMBL
      A0A803JHM5, A9ULD4
      Related
      ENSXETP00000004789.3, ENSXETT00000004789.5
      Conserved Domains (1) summary
      TIGR03234
      Location:1 → 261
      OH-pyruv-isom; hydroxypyruvate isomerase
    Nucleotide Protein Strain
    Heading Accession and Version

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