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LOC9639907 eukaryotic translation initiation factor 3 subunit B [ Selaginella moellendorffii ]

Gene ID: 9639907, updated on 22-Oct-2023

Summary

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Gene symbol
LOC9639907
Gene description
eukaryotic translation initiation factor 3 subunit B
Locus tag
SELMODRAFT_182220
Gene type
protein coding
RefSeq status
MODEL
Organism
Selaginella moellendorffii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314333.1 (300110..302965)

NW_003314333.1Genomic Context describing neighboring genes Neighboring gene probable L-ascorbate peroxidase 6, chloroplastic/mitochondrial Neighboring gene molybdenum cofactor sulfurase Neighboring gene pentatricopeptide repeat-containing protein At4g02750-like Neighboring gene transfer RNA alanine (anticodon AGC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003314333 Unplaced Scaffold Reference v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of eukaryotic translation initiation factor 3 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic translation initiation factor 3 subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0

Genomic

  1. NW_003314333.1 Reference v1.0

    Range
    300110..302965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024660054.1 → XP_024515822.1  eukaryotic translation initiation factor 3 subunit B isoform X1

    Conserved Domains (3) summary
    cd12278
    Location:67 → 166
    RRM_eIF3B; RNA recognition motif in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar proteins
    sd00039
    Location:240 → 274
    7WD40; WD40 repeat [structural motif]
    cl25541
    Location:206 → 684
    eIF2A; Eukaryotic translation initiation factor eIF2A

  2. XM_002986104.2 → XP_002986150.1  eukaryotic translation initiation factor 3 subunit B isoform X2

    See identical proteins and their annotated locations for XP_002986150.1

    UniProtKB/TrEMBL
    D8SS57
    Conserved Domains (4) summary
    COG0724
    Location:68 → 179
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12278
    Location:67 → 149
    RRM_eIF3B; RNA recognition motif in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar proteins
    pfam08662
    Location:412 → 612
    eIF2A; Eukaryotic translation initiation factor eIF2A
    sd00039
    Location:223 → 257
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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