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DDB_G0269272 hypothetical protein [ Dictyostelium discoideum AX4 ]

Gene ID: 8616784, updated on 17-May-2024

Summary

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Gene symbol
DDB_G0269272
Gene description
hypothetical protein
Primary source
dictyBase:DDB_G0269272
Locus tag
DDB_G0269272
See related
AmoebaDB:DDB_G0269272; VEuPathDB:DDB_G0269272
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0190143; DDB_0190143
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_007087.3 (2434615..2438410)

Chromosome 1 - NC_007087.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene elongation factor 1 alpha Neighboring gene dihydroxyacetone kinase Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007087.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gradients of PI(4,5)P(2) and PI(3,5)P(2) Jointly Participate in Shaping the Back State of Dictyostelium Cells. Li D, et al. Front Cell Dev Biol, 2022. PMID 35186938, Free PMC Article
  2. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables phosphatidylinositol-3,4,5-trisphosphate binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables phosphatidylinositol-3,4-bisphosphate binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables phosphatidylinositol-3,5-bisphosphate phosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables phosphatidylinositol-3-phosphate phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cell leading edge IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in macropinocytic cup IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Names
hypothetical protein
XP_645840.1
  • BcDNA:GH04637 protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007087.3 Reference assembly

    Range
    2434615..2438410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_640748.1 → XP_645840.1  hypothetical protein DDB_G0269272 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_645840.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q55EE1
    Conserved Domains (5) summary
    cd00204
    Location:76 → 206
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam06602
    Location:715 → 1048
    Myotub-related; Myotubularin-like phosphatase domain
    pfam12796
    Location:86 → 183
    Ank_2; Ankyrin repeats (3 copies)
    pfam13857
    Location:171 → 226
    Ank_5; Ankyrin repeats (many copies)
    sd00045
    Location:81 → 112
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q55EE1.1

Gene LinkOut

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