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AT3G13700 RNA-binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820579, updated on 15-Feb-2024

Summary

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Gene symbol
AT3G13700
Gene description
RNA-binding (RRM/RBD/RNP motifs) family protein
Primary source
Araport:AT3G13700
Locus tag
AT3G13700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (4490628..4493737, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene LSD1-like2 Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein Neighboring gene prenylated RAB acceptor 1.F4 Neighboring gene PRA1 (Prenylated rab acceptor) family protein Neighboring gene ncRNA Neighboring gene cytochrome P450, family 90, subfamily D, polypeptide 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001125150.1
NM_112220.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA-binding (RRM/RBD/RNP motifs) family protein
NP_001118622.1
  • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G42240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_187983.1
  • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G42240.2); Has 727 Blast hits to 705 proteins in 179 species: Archae - 2; Bacteria - 0; Metazoa - 299; Fungi - 191; Plants - 191; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4490628..4493737 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001125150.1 → NP_001118622.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118622.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VAU9, A0A654F6U6, Q8GYT5
    Conserved Domains (3) summary
    COG0724
    Location:105 → 264
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12245
    Location:203 → 281
    RRM_scw1_like; RNA recognition motif (RRM) found in yeast cell wall integrity protein scw1 and similar proteins
    cl17169
    Location:38 → 112
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. NM_112220.2 → NP_187983.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187983.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VAU9, B3H4P0
    Conserved Domains (3) summary
    COG0724
    Location:37 → 166
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12245
    Location:221 → 296
    RRM_scw1_like; RNA recognition motif in yeast cell wall integrity protein scw1 and similar proteins
    cd12420
    Location:37 → 130
    RRM_RBPMS_like; RNA recognition motif in RNA-binding protein with multiple splicing (RBP-MS)-like proteins
Nucleotide Protein
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