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Hr3 Hormone receptor 3 [ Ixodes scapularis (black-legged tick) ]

Gene ID: 8033041, updated on 23-May-2024

Summary

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Gene symbol
Hr3
Gene description
Hormone receptor 3
See related
VectorBase:ISCP_035362; EnsemblRapid:LOC8033041
Gene type
protein coding
RefSeq status
MODEL
Organism
Ixodes scapularis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
Orthologs
fruit fly all
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Genomic context

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See Hr3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
103 current ASM1692078v2 (GCF_016920785.2) Unplaced Scaffold NW_024609835.1 (165806695..165988136)
102 previous assembly Ixodes_scapularus_ComboLowHiFi (GCF_016920785.1) Unplaced Scaffold NW_024388144.1 (550202..731641)

NW_024609835.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8036549 Neighboring gene uncharacterized LOC115330160 Neighboring gene uncharacterized LOC115313545 Neighboring gene cuticlin-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome of the female synganglion of the black-legged tick Ixodes scapularis (Acari: Ixodidae) with comparison between Illumina and 454 systems. Egekwu N, et al. PLoS One, 2014. PMID 25075967, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable nuclear hormone receptor HR3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ixodes scapularis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1692078v2

Genomic

  1. NW_024609835.1 Reference ASM1692078v2

    Range
    165806695..165988136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029969591.3 → XP_029825451.1  probable nuclear hormone receptor HR3 isoform X1

    Related
    XP_029825451.1, XM_029969591.3
    Conserved Domains (2) summary
    cd06968
    Location:63 → 156
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:306 → 547
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  2. XM_040502030.1 → XP_040357964.1  probable nuclear hormone receptor HR3 isoform X6

    Related
    XP_040357964.1, XM_040502030.1
    Conserved Domains (2) summary
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:256 → 498
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  3. XM_029969654.4 → XP_029825514.1  probable nuclear hormone receptor HR3 isoform X2

    Related
    XP_029825514.1, XM_029969654.4
    Conserved Domains (2) summary
    cd06968
    Location:63 → 156
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:294 → 536
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  4. XM_029969773.4 → XP_029825633.1  probable nuclear hormone receptor HR3 isoform X5

    Related
    XP_029825633.1, XM_029969773.4
    Conserved Domains (2) summary
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:268 → 509
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  5. XM_040502032.1 → XP_040357966.1  probable nuclear hormone receptor HR3 isoform X8

    UniProtKB/TrEMBL
    B7PY20
    Related
    XP_040357966.1, XM_040502032.1
    Conserved Domains (2) summary
    cd06968
    Location:3 → 97
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:235 → 477
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  6. XM_029969717.3 → XP_029825577.1  probable nuclear hormone receptor HR3 isoform X3

    Related
    XP_029825577.1, XM_029969717.3
    Conserved Domains (2) summary
    cd06968
    Location:42 → 135
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:285 → 526
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  7. XM_040502029.1 → XP_040357963.1  probable nuclear hormone receptor HR3 isoform X4

    Related
    XP_040357963.1, XM_040502029.1
    Conserved Domains (2) summary
    cd06968
    Location:42 → 135
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:273 → 515
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  8. XM_040502031.2 → XP_040357965.1  probable nuclear hormone receptor HR3 isoform X7

    UniProtKB/TrEMBL
    B7PY20
    Related
    XP_040357965.1, XM_040502031.2
    Conserved Domains (2) summary
    cd06968
    Location:3 → 97
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:247 → 488
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
Nucleotide Protein
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