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Mical Molecule interacting with CasL [ Ixodes scapularis (black-legged tick) ]

Gene ID: 8027932, updated on 22-May-2024

Summary

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Gene symbol
Mical
Gene description
Molecule interacting with CasL
See related
VectorBase:ISCP_025757; EnsemblRapid:LOC8027932
Gene type
protein coding
RefSeq status
MODEL
Organism
Ixodes scapularis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
Orthologs
fruit fly all
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Genomic context

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See Mical in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
103 current ASM1692078v2 (GCF_016920785.2) Unplaced Scaffold NW_024609879.1 (87141860..87246362)
102 previous assembly Ixodes_scapularus_ComboLowHiFi (GCF_016920785.1) Unplaced Scaffold NW_024389701.1 (641505..756734)

NW_024609879.1Genomic Context describing neighboring genes Neighboring gene zinc finger C3H1 domain-containing protein Neighboring gene uncharacterized LOC120837757 Neighboring gene misexpression suppressor of ras 3 Neighboring gene uncharacterized LOC120837760 Neighboring gene small nucleolar RNA U3 Neighboring gene uncharacterized LOC8027922

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome of the female synganglion of the black-legged tick Ixodes scapularis (Acari: Ixodidae) with comparison between Illumina and 454 systems. Egekwu N, et al. PLoS One, 2014. PMID 25075967, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-actin-monooxygenase MICAL3; F-actin-monooxygenase Mical
Names
putative calponin similarity

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ixodes scapularis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1692078v2

Genomic

  1. NW_024609879.1 Reference ASM1692078v2

    Range
    87141860..87246362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042293178.1 → XP_042149112.1  F-actin-monooxygenase Mical isoform X2

    UniProtKB/TrEMBL
    A0A4D5RJ05
    Related
    XP_042149112.1, XM_042293178.1
    Conserved Domains (6) summary
    TIGR04018
    Location:101 → 129
    Bthiol_YpdA; putative bacillithiol system oxidoreductase, YpdA family
    cd09439
    Location:980 → 1037
    LIM_Mical; The LIM domain of Mical (molecule interacting with CasL)
    COG0446
    Location:56 → 132
    FadH2; NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism]
    COG5069
    Location:528 → 686
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK03918
    Location:2618 → 2784
    PRK03918; DNA double-strand break repair ATPase Rad50
    cl30692
    Location:99 → 238
    UbiH; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]

  2. XM_042293177.1 → XP_042149111.1  F-actin-monooxygenase MICAL3 isoform X1

    UniProtKB/TrEMBL
    A0A4D5RJ05
    Related
    XP_042149111.1, XM_042293177.1
    Conserved Domains (3) summary
    cd09439
    Location:426 → 483
    LIM_Mical; The LIM domain of Mical (molecule interacting with CasL)
    COG5069
    Location:2 → 132
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK03918
    Location:2065 → 2231
    PRK03918; DNA double-strand break repair ATPase Rad50
Nucleotide Protein
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