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VASN vasorin [ Bos taurus (domestic cattle) ]

Gene ID: 787995, updated on 10-Aug-2024

Summary

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Gene symbol
VASN
Gene description
vasorin
See related
BGD:BT14096; Ensembl:ENSBTAG00000046339
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
SLITL2
Orthologs
human mouse all
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Genomic context

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See VASN in Genome Data Viewer
Location:
chromosome: 25
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (3526090..3536775)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104970145 Neighboring gene GLIS family zinc finger 2 Neighboring gene presequence translocase associated motor 16 Neighboring gene coronin 7 Neighboring gene large ribosomal subunit protein eL37-like Neighboring gene small ribosomal subunit protein uS10-like Neighboring gene DnaJ heat shock protein family (Hsp40) member A3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vasorin
Names
slit-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001083796.1 → NP_001077265.1  vasorin precursor

    See identical proteins and their annotated locations for NP_001077265.1

    Status: PROVISIONAL

    Source sequence(s)
    BC134480
    UniProtKB/TrEMBL
    A0A8J8YKL2, A0AAF6DM61, A4IFA5, G3N0B6, M5FK21
    Related
    ENSBTAP00000101415.1, ENSBTAT00000099863.1
    Conserved Domains (4) summary
    TIGR00864
    Location:273 → 565
    PCC; polycystin cation channel protein
    COG4886
    Location:180 → 305
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:60 → 80
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:60 → 115
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    3526090..3536775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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