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SRRM1 serine and arginine repetitive matrix 1 [ Bos taurus (cattle) ]

Gene ID: 784123, updated on 3-Apr-2024

Summary

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Official Symbol
SRRM1provided by VGNC
Official Full Name
serine and arginine repetitive matrix 1provided by VGNC
Primary source
VGNC:VGNC:35294
See related
BGD:BT26265; Ensembl:ENSBTAG00000013772
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SRRM1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (128253269..128282578, complement)

Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene H/ACA ribonucleoprotein complex subunit 3 Neighboring gene uncharacterized LOC132343452 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene non-compact myelin associated protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine repetitive matrix protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    128253269..128282578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059879691.1 → XP_059735674.1  serine/arginine repetitive matrix protein 1 isoform X8

  2. XM_015460794.3 → XP_015316280.2  serine/arginine repetitive matrix protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q1MSC8
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:611 → 812
    Atrophin-1; Atrophin-1 family

  3. XM_024982610.2 → XP_024838378.1  serine/arginine repetitive matrix protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A3Q1MSC8
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl28033
    Location:601 → 800
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  4. XM_005203308.5 → XP_005203365.2  serine/arginine repetitive matrix protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q1MSC8
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:612 → 813
    Atrophin-1; Atrophin-1 family

  5. XM_059879686.1 → XP_059735669.1  serine/arginine repetitive matrix protein 1 isoform X6

  6. XM_005203307.5 → XP_005203364.2  serine/arginine repetitive matrix protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1MSC8
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:613 → 814
    Atrophin-1; Atrophin-1 family

  7. XM_002685707.7 → XP_002685753.3  serine/arginine repetitive matrix protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A3Q1MSC8, E1BP16
    Related
    ENSBTAP00000053480.3, ENSBTAT00000061408.4
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl28033
    Location:603 → 802
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  8. XM_024982584.2 → XP_024838352.1  serine/arginine repetitive matrix protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1MP80, A0A3Q1MSC8
    Related
    ENSBTAP00000071447.1, ENSBTAT00000076505.2
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:614 → 815
    Atrophin-1; Atrophin-1 family

  9. XM_059879695.1 → XP_059735678.1  serine/arginine repetitive matrix protein 1 isoform X9

  10. XM_059879700.1 → XP_059735683.1  serine/arginine repetitive matrix protein 1 isoform X10

    Related
    ENSBTAP00000078531.1, ENSBTAT00000134484.1
Nucleotide Protein Strain
Heading Accession and Version

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