U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

jade3 jade family PHD finger 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779948, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
jade3provided by Xenbase
Official Full Name
jade family PHD finger 3provided by Xenbase
Primary source
Xenbase:XB-GENE-978173
See related
Ensembl:ENSXETG00000004129
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
phf16
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (114968030..114996980)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (111421127..111449348)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene solute carrier family 9 member A7 Neighboring gene RP2, ARL3 GTPase activating protein Neighboring gene regucalcin Neighboring gene phosphatidylinositol-specific phospholipase C, X domain containing 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC146209

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of histone acetyltransferase complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
protein Jade-3
Names
PHD finger protein 16
jade family PHD finger protein 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079025.1 → NP_001072493.1  protein Jade-3

    See identical proteins and their annotated locations for NP_001072493.1

    Status: PROVISIONAL

    Source sequence(s)
    BC121924
    UniProtKB/Swiss-Prot
    Q0P4S5
    UniProtKB/TrEMBL
    A0A6I8RV92
    Related
    ENSXETP00000085196.2, ENSXETT00000083602.2
    Conserved Domains (2) summary
    COG5141
    Location:165 → 536
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15706
    Location:257 → 367
    ePHD_JADE3; Extended PHD finger found in protein Jade-3 and similar proteins

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    114968030..114996980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018091343.2 → XP_017946832.1  protein Jade-3 isoform X1

    UniProtKB/TrEMBL
    A0A6I8RV92, A0A8J0SF38

  2. XM_012957273.3 → XP_012812727.1  protein Jade-3 isoform X1

    UniProtKB/TrEMBL
    A0A6I8RV92, A0A8J0SF38
    Conserved Domains (3) summary
    COG5141
    Location:172 → 543
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15681
    Location:211 → 260
    PHD_JADE3; PHD finger found in protein Jade-3 and similar proteins
    cd15706
    Location:264 → 374
    ePHD_JADE3; Extended PHD finger found in protein Jade-3 and similar proteins

  3. XM_018091344.2 → XP_017946833.1  protein Jade-3 isoform X2

    UniProtKB/Swiss-Prot
    Q0P4S5
    UniProtKB/TrEMBL
    A0A6I8RV92
    Conserved Domains (2) summary
    COG5141
    Location:165 → 536
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15706
    Location:257 → 367
    ePHD_JADE3; Extended PHD finger found in protein Jade-3 and similar proteins
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0P4S5.1 GenPept UniProtKB/Swiss-Prot:Q0P4S5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.