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tmem229b transmembrane protein 229B [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779772, updated on 5-Mar-2024

Summary

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Official Symbol
tmem229bprovided by Xenbase
Official Full Name
transmembrane protein 229Bprovided by Xenbase
Primary source
Xenbase:XB-GENE-987311
See related
Ensembl:ENSXETG00000003909
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (117777628..117829717, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (97423951..97474700, complement)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116406754 Neighboring gene uncharacterized LOC116406882 Neighboring gene U2 spliceosomal RNA Neighboring gene zinc finger BED domain-containing protein 5-like Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Exploring nervous system transcriptomes during embryogenesis and metamorphosis in Xenopus tropicalis using EST analysis. Fierro AC, et al. BMC Genomics, 2007 May 16. PMID 17506875, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC145961

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 229b
Names
UPF0698 transmembrane protein C14orf83 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078851.2 → NP_001072319.2  transmembrane protein 229b

    See identical proteins and their annotated locations for NP_001072319.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    BC121384, CN082095, DT442314
    UniProtKB/Swiss-Prot
    Q0V9V2
    UniProtKB/TrEMBL
    A0A5S6KFZ0
    Related
    ENSXETP00000101853.1, ENSXETT00000113163.1
    Conserved Domains (1) summary
    cl26964
    Location:56 → 141
    ABC_trans_CmpB; Putative ABC-transporter type IV

  2. NM_001244947.1 → NP_001231876.1  transmembrane protein 229b

    See identical proteins and their annotated locations for NP_001231876.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    BC121384, DR877468, DT442314
    UniProtKB/Swiss-Prot
    Q0V9V2
    UniProtKB/TrEMBL
    A0A5S6KFZ0
    Related
    ENSXETP00000115938.1, ENSXETT00000113680.1
    Conserved Domains (1) summary
    cl26964
    Location:56 → 141
    ABC_trans_CmpB; Putative ABC-transporter type IV

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    117777628..117829717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018096304.2 → XP_017951793.1  transmembrane protein 229b isoform X1

    UniProtKB/Swiss-Prot
    Q0V9V2
    UniProtKB/TrEMBL
    A0A5S6KFZ0
    Related
    ENSXETP00000109173.1, ENSXETT00000110849.1
    Conserved Domains (1) summary
    cl26964
    Location:56 → 141
    ABC_trans_CmpB; Putative ABC-transporter type IV

  2. XM_031890539.1 → XP_031746399.1  transmembrane protein 229b isoform X1

    UniProtKB/Swiss-Prot
    Q0V9V2
    UniProtKB/TrEMBL
    A0A5S6KFZ0
    Related
    ENSXETP00000115430.1, ENSXETT00000106956.1
    Conserved Domains (1) summary
    cl26964
    Location:56 → 141
    ABC_trans_CmpB; Putative ABC-transporter type IV

  3. XM_018096303.2 → XP_017951792.1  transmembrane protein 229b isoform X1

    UniProtKB/Swiss-Prot
    Q0V9V2
    UniProtKB/TrEMBL
    A0A5S6KFZ0
    Conserved Domains (1) summary
    cl26964
    Location:56 → 141
    ABC_trans_CmpB; Putative ABC-transporter type IV

  4. XM_012968608.3 → XP_012824062.1  transmembrane protein 229b isoform X1

    See identical proteins and their annotated locations for XP_012824062.1

    UniProtKB/Swiss-Prot
    Q0V9V2
    UniProtKB/TrEMBL
    A0A5S6KFZ0
    Related
    ENSXETP00000119073.1, ENSXETT00000124277.1
    Conserved Domains (1) summary
    cl26964
    Location:56 → 141
    ABC_trans_CmpB; Putative ABC-transporter type IV

  5. XM_018096309.2 → XP_017951798.1  transmembrane protein 229b isoform X1

    UniProtKB/Swiss-Prot
    Q0V9V2
    UniProtKB/TrEMBL
    A0A5S6KFZ0
    Conserved Domains (1) summary
    cl26964
    Location:56 → 141
    ABC_trans_CmpB; Putative ABC-transporter type IV

  6. XM_031890540.1 → XP_031746400.1  transmembrane protein 229b isoform X1

    UniProtKB/Swiss-Prot
    Q0V9V2
    UniProtKB/TrEMBL
    A0A5S6KFZ0
    Conserved Domains (1) summary
    cl26964
    Location:56 → 141
    ABC_trans_CmpB; Putative ABC-transporter type IV

  7. XM_018096307.2 → XP_017951796.1  transmembrane protein 229b isoform X1

    UniProtKB/Swiss-Prot
    Q0V9V2
    UniProtKB/TrEMBL
    A0A5S6KFZ0
    Conserved Domains (1) summary
    cl26964
    Location:56 → 141
    ABC_trans_CmpB; Putative ABC-transporter type IV

  8. XM_012968607.3 → XP_012824061.1  transmembrane protein 229b isoform X1

    See identical proteins and their annotated locations for XP_012824061.1

    UniProtKB/Swiss-Prot
    Q0V9V2
    UniProtKB/TrEMBL
    A0A5S6KFZ0
    Related
    ENSXETP00000116312.1, ENSXETT00000112456.1
    Conserved Domains (1) summary
    cl26964
    Location:56 → 141
    ABC_trans_CmpB; Putative ABC-transporter type IV

  9. XM_018096305.2 → XP_017951794.1  transmembrane protein 229b isoform X1

    UniProtKB/Swiss-Prot
    Q0V9V2
    UniProtKB/TrEMBL
    A0A5S6KFZ0
    Conserved Domains (1) summary
    cl26964
    Location:56 → 141
    ABC_trans_CmpB; Putative ABC-transporter type IV
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0V9V2.1 GenPept UniProtKB/Swiss-Prot:Q0V9V2

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