U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Tmem229b transmembrane protein 229B [ Mus musculus (house mouse) ]

Gene ID: 268567, updated on 30-Apr-2024

Summary

Official Symbol
Tmem229bprovided by MGI
Official Full Name
transmembrane protein 229Bprovided by MGI
Primary source
MGI:MGI:2444389
See related
Ensembl:ENSMUSG00000046157 AllianceGenome:MGI:2444389
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9830138K24; 6330442E10Rik
Summary
Acts upstream of or within response to bacterium. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM229B (transmembrane protein 229B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in thymus adult (RPKM 17.0), CNS E18 (RPKM 15.4) and 26 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Tmem229b in Genome Data Viewer
Location:
12 C3; 12 35.51 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (79008569..79054333, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (78961795..79007559, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene pleckstrin 2 Neighboring gene STARR-seq mESC enhancer starr_32580 Neighboring gene predicted gene, 46359 Neighboring gene STARR-seq mESC enhancer starr_32581 Neighboring gene predicted gene, 46360 Neighboring gene STARR-seq mESC enhancer starr_32582 Neighboring gene STARR-seq mESC enhancer starr_32583 Neighboring gene STARR-seq mESC enhancer starr_32585 Neighboring gene STARR-seq mESC enhancer starr_32589 Neighboring gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 Neighboring gene predicted gene, 53729 Neighboring gene RIKEN cDNA 9230116L04 gene Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class H

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within macrophage activation IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within response to bacterium IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001170401.2NP_001163872.1  transmembrane protein 229B

    See identical proteins and their annotated locations for NP_001163872.1

    Status: VALIDATED

    Source sequence(s)
    AC165249, BC057677
    Consensus CDS
    CCDS26005.1
    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Related
    ENSMUSP00000070637.8, ENSMUST00000070174.14
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV
  2. NM_001364891.1NP_001351820.1  transmembrane protein 229B

    Status: VALIDATED

    Source sequence(s)
    AC165249
    Consensus CDS
    CCDS26005.1
    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV
  3. NM_001364892.1NP_001351821.1  transmembrane protein 229B

    Status: VALIDATED

    Source sequence(s)
    AC165249
    Consensus CDS
    CCDS26005.1
    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Related
    ENSMUSP00000134376.2, ENSMUST00000174072.8
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV
  4. NM_178745.5NP_848860.1  transmembrane protein 229B

    See identical proteins and their annotated locations for NP_848860.1

    Status: VALIDATED

    Source sequence(s)
    BC057677, BC066067
    Consensus CDS
    CCDS26005.1
    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Related
    ENSMUSP00000053835.7, ENSMUST00000056660.13
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    79008569..79054333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006515914.2XP_006515977.1  transmembrane protein 229B isoform X1

    See identical proteins and their annotated locations for XP_006515977.1

    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV
  2. XM_030246737.1XP_030102597.1  transmembrane protein 229B isoform X1

    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Related
    ENSMUSP00000134348.2, ENSMUST00000174697.2
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV
  3. XM_006515913.3XP_006515976.1  transmembrane protein 229B isoform X1

    See identical proteins and their annotated locations for XP_006515976.1

    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV
  4. XM_006515909.3XP_006515972.1  transmembrane protein 229B isoform X1

    See identical proteins and their annotated locations for XP_006515972.1

    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV
  5. XM_006515915.5XP_006515978.1  transmembrane protein 229B isoform X1

    See identical proteins and their annotated locations for XP_006515978.1

    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV
  6. XM_030246736.2XP_030102596.1  transmembrane protein 229B isoform X1

    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV
  7. XM_036157432.1XP_036013325.1  transmembrane protein 229B isoform X1

    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV
  8. XM_036157433.1XP_036013326.1  transmembrane protein 229B isoform X1

    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV
  9. XM_036157434.1XP_036013327.1  transmembrane protein 229B isoform X1

    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV
  10. XM_030246734.1XP_030102594.1  transmembrane protein 229B isoform X1

    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV
  11. XM_030246735.2XP_030102595.1  transmembrane protein 229B isoform X1

    UniProtKB/Swiss-Prot
    Q3UDU2, Q6AXE5, Q8BFQ2, Q8CCD3
    Conserved Domains (1) summary
    cl26964
    Location:50135
    ABC_trans_CmpB; Putative ABC-transporter type IV