sp9 Sp9 transcription factor [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: sp9provided by Xenbase
Official Full Name: Sp9 transcription factorprovided by Xenbase
Primary source: Xenbase:XB-GENE-5931012
See related: Ensembl:ENSXETG00000030987
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: znf990
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	9	NC_030685.2 (66456387..66460920, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	9	NC_030685.1 (61330856..61335403, complement)

Chromosome 9 - NC_030685.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transcription factor Sp9

Names: Sp9 transcription factor homolog; trans-acting transcription factor 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001078801.1 → NP_001072269.1 transcription factor Sp9

See identical proteins and their annotated locations for NP_001072269.1

Status: PROVISIONAL

Source sequence(s)

BC121268

UniProtKB/Swiss-Prot

Q0VA40

Related

ENSXETP00000062650.1, ENSXETT00000064701.3

Conserved Domains (3) summary

sd00017
Location:300 → 319

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:355 → 377

zf-C2H2; Zinc finger, C2H2 type

pfam13465
Location:341 → 364

zf-H2C2_2; Zinc-finger double domain