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SP9 Sp9 transcription factor [ Homo sapiens (human) ]

Gene ID: 100131390, updated on 18-Aug-2020

Summary

Official Symbol
SP9provided by HGNC
Official Full Name
Sp9 transcription factorprovided by HGNC
Primary source
HGNC:HGNC:30690
See related
Ensembl:ENSG00000217236
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZNF990
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See SP9 in Genome Data Viewer
Location:
2q31.1
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (174334954..174338500)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (175199769..175205859)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1305 Neighboring gene uncharacterized LOC102724194 Neighboring gene VISTA enhancer hs860 Neighboring gene VISTA enhancer hs953 Neighboring gene corepressor interacting with RBPJ, CIR1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA-binding transcription factor activity, RNA polymerase II-specific ISA
Inferred from Sequence Alignment
more info
 
RNA polymerase II proximal promoter sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
sequence-specific double-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
embryonic limb morphogenesis IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nuclear chromatin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear chromatin ISA
Inferred from Sequence Alignment
more info
 

General protein information

Preferred Names
transcription factor Sp9
Names
Sp9 transcription factor homolog
zinc finger protein 990

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145250.2NP_001138722.1  transcription factor Sp9

    See identical proteins and their annotated locations for NP_001138722.1

    Status: VALIDATED

    Source sequence(s)
    AC018470
    Consensus CDS
    CCDS46453.1
    UniProtKB/Swiss-Prot
    P0CG40
    Related
    ENSP00000378418.2, ENST00000394967.3
    Conserved Domains (3) summary
    sd00017
    Location:337356
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:392414
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:378401
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    174334954..174338500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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