U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

iftap intraflagellar transport associated protein [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779527, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
iftapprovided by Xenbase
Official Full Name
intraflagellar transport associated proteinprovided by Xenbase
Primary source
Xenbase:XB-GENE-973490
See related
Ensembl:ENSXETG00000032018
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
c11orf74
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See iftap in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (10659406..10673434, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (3851322..3865377, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene ALX homeobox 4 Neighboring gene exostosin glycosyltransferase 2 Neighboring gene recombination activating gene 2 Neighboring gene recombination activating gene 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
intraflagellar transport-associated protein; protein C11orf74 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001197154.1 → NP_001184083.1  intraflagellar transport-associated protein

    See identical proteins and their annotated locations for NP_001184083.1

    Status: VALIDATED

    Source sequence(s)
    AL879003, BC154868
    UniProtKB/TrEMBL
    A0A6I8PXB0, A8WGV6
    Related
    ENSXETP00000060543.2, ENSXETT00000061097.3
    Conserved Domains (1) summary
    pfam17722
    Location:1 → 194
    DUF5567; Family of unknown function (DUF5567)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    10659406..10673434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012961283.3 → XP_012816737.1  protein C11orf74 homolog isoform X1

    See identical proteins and their annotated locations for XP_012816737.1

    UniProtKB/TrEMBL
    A0A6I8PXB0, A8WGV6
    Conserved Domains (1) summary
    pfam17722
    Location:1 → 194
    DUF5567; Family of unknown function (DUF5567)

  2. XM_012961284.3 → XP_012816738.1  protein C11orf74 homolog isoform X2

    See identical proteins and their annotated locations for XP_012816738.1

    UniProtKB/TrEMBL
    A8WGV6, Q0VFC8
    Conserved Domains (1) summary
    pfam17722
    Location:1 → 190
    DUF5567; Family of unknown function (DUF5567)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.