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gtf3c1 general transcription factor IIIC subunit 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779454, updated on 17-Aug-2024

Summary

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Official Symbol
gtf3c1provided by Xenbase
Official Full Name
general transcription factor IIIC subunit 1provided by Xenbase
Primary source
Xenbase:XB-GENE-5913390
See related
Ensembl:ENSXETG00000033820
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
tfiiic; tfiiic220; tfiiicalpha
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
37
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (40234477..40314404)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (36859902..36937914)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene GSG1 like Neighboring gene katanin interacting protein Neighboring gene small nuclear ribonucleoprotein, U11/U12 25kDa subunit Neighboring gene polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa Neighboring gene hemoglobin subunit gamma 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC185774

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within transcription initiation at RNA polymerase III promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of transcription factor TFIIIC complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
general transcription factor 3C polypeptide 1
Names
general transcription factor IIIC, polypeptide 1, alpha 220kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    40234477..40314404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002938289.5 → XP_002938335.3  general transcription factor 3C polypeptide 1

    UniProtKB/TrEMBL
    A0A6I8Q266, A0A6I8RDV5
    Related
    ENSXETP00000063420.3, ENSXETT00000061050.3
    Conserved Domains (2) summary
    cd16169
    Location:591 → 687
    Tau138_eWH; extended winged-helix domain of tau138 and related proteins
    pfam04182
    Location:169 → 244
    B-block_TFIIIC; B-block binding subunit of TFIIIC
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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