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SRSF6 serine and arginine rich splicing factor 6 [ Sus scrofa (pig) ]

Gene ID: 768102, updated on 5-Mar-2024

Summary

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Gene symbol
SRSF6
Gene description
serine and arginine rich splicing factor 6
See related
Ensembl:ENSSSCG00000007362
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
SFRS6
Expression
Ubiquitous expression in kidney (RPKM 88.1), spleen (RPKM 87.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SRSF6 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (46119612..46122540)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (51513133..51516063)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257470 Neighboring gene protein tyrosine phosphatase receptor type T Neighboring gene uncharacterized LOC100520338 Neighboring gene uncharacterized LOC106506015 Neighboring gene L3MBTL histone methyl-lysine binding protein 1 Neighboring gene serum/glucocorticoid regulated kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich splicing factor 6
Names
splicing factor, arginine/serine-rich 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077217.1 → NP_001070685.1  serine/arginine-rich splicing factor 6

    See identical proteins and their annotated locations for NP_001070685.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ972964
    UniProtKB/TrEMBL
    A0A4X1TTS8, F1SDT8, Q06AA0
    Related
    ENSSSCP00000032081.1, ENSSSCT00000047276.3
    Conserved Domains (2) summary
    cd12596
    Location:3 → 72
    RRM1_SRSF6; RNA recognition motif 1 in vertebrate serine/arginine-rich splicing factor 6 (SRSF6)
    cd12600
    Location:110 → 181
    RRM2_SRSF4_like; RNA recognition motif 2 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    46119612..46122540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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