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CDK5RAP1 CDK5 regulatory subunit associated protein 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 746993, updated on 17-Aug-2024

Summary

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Official Symbol
CDK5RAP1provided by VGNC
Official Full Name
CDK5 regulatory subunit associated protein 1provided by VGNC
Primary source
VGNC:VGNC:6074
Locus tag
CK820_G0043016
See related
Ensembl:ENSPTRG00000013399
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CDK5RAP1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 21 NC_072419.2 (39569281..39610931, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 20 NC_072418.1 (39601025..39643111, complement)

Chromosome 21 - NC_072419.2Genomic Context describing neighboring genes Neighboring gene BPI fold containing family A member 1 Neighboring gene BPI fold containing family B member 1 Neighboring gene syntrophin alpha 1 Neighboring gene CBFA2/RUNX1 partner transcriptional co-repressor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylthiotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CDK5 regulatory subunit-associated protein 1; mitochondrial tRNA methylthiotransferase CDK5RAP1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072419.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    39569281..39610931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009437054.4 → XP_009435329.2  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X4

    UniProtKB/TrEMBL
    A0A2I3RF55

  2. XM_063802824.1 → XP_063658894.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X5

    UniProtKB/TrEMBL
    A0A2I3RF55

  3. XM_003953706.5 → XP_003953755.3  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X2

    UniProtKB/TrEMBL
    A0A2I3RF55

  4. XM_016937717.3 → XP_016793206.2  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X8

    UniProtKB/TrEMBL
    A0A2I3RF55

  5. XM_054674873.2 → XP_054530848.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X6

    UniProtKB/TrEMBL
    A0A2J8JYA1

  6. XM_009437058.5 → XP_009435333.2  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X7

    UniProtKB/TrEMBL
    A0A2J8JYA1

  7. XM_016937716.2 → XP_016793205.2  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8JY94, A0A6D2XNH2, H2QK68

  8. XM_016937715.2 → XP_016793204.2  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X1

    UniProtKB/TrEMBL
    K7CX68

RNA

  1. XR_010154199.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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