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ZMAT2 zinc finger matrin-type 2 [ Pan troglodytes (chimpanzee) ]

Gene ID: 736814, updated on 29-Mar-2024

Summary

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Official Symbol
ZMAT2provided by VGNC
Official Full Name
zinc finger matrin-type 2provided by VGNC
Primary source
VGNC:VGNC:4230
Locus tag
CK820_G0047147
See related
Ensembl:ENSPTRG00000017327
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See ZMAT2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (138415690..138421965)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (138433835..138440111)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene WD repeat domain 55 Neighboring gene DND microRNA-mediated repression inhibitor 1 Neighboring gene histidyl-tRNA synthetase 1 Neighboring gene histidyl-tRNA synthetase 2, mitochondrial Neighboring gene uncharacterized LOC134810110 Neighboring gene uncharacterized LOC107974883

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger matrin-type protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    138415690..138421965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001140609.6 → XP_001140609.1  zinc finger matrin-type protein 2

    See identical proteins and their annotated locations for XP_001140609.1

    UniProtKB/TrEMBL
    A0A2J8JIV9, A0A6D2Y8A1, H2QRN0
    Related
    ENSPTRP00000029620.2
    Conserved Domains (2) summary
    smart00451
    Location:77 → 108
    ZnF_U1; U1-like zinc finger
    pfam08648
    Location:178 → 196
    DUF1777; Protein of unknown function (DUF1777)
Nucleotide Protein
Heading Accession and Version

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