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ZMAT2 zinc finger matrin-type 2 [ Homo sapiens (human) ]

Gene ID: 153527, updated on 12-Aug-2018

Summary

Official Symbol
ZMAT2provided by HGNC
Official Full Name
zinc finger matrin-type 2provided by HGNC
Primary source
HGNC:HGNC:26433
See related
Ensembl:ENSG00000146007 Vega:OTTHUMG00000129503
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Snu23; Ptg-12
Expression
Ubiquitous expression in brain (RPKM 45.9), fat (RPKM 34.0) and 25 other tissues See more
Orthologs

Genomic context

See ZMAT2 in Genome Data Viewer
Location:
5q31.3
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 5 NC_000005.10 (140700360..140706681)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (140078265..140086248)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene WD repeat domain 55 Neighboring gene DND microRNA-mediated repression inhibitor 1 Neighboring gene histidyl-tRNA synthetase Neighboring gene histidyl-tRNA synthetase 2, mitochondrial Neighboring gene uncharacterized LOC105378198 Neighboring gene vault RNA 1-1 Neighboring gene vault RNA 1-2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Pathways from BioSystems

  • Spliceosome, organism-specific biosystem (from KEGG)
    Spliceosome, organism-specific biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
  • Spliceosome, conserved biosystem (from KEGG)
    Spliceosome, conserved biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ31121

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
mRNA splicing, via spliceosome IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
U2-type precatalytic spliceosome IDA
Inferred from Direct Assay
more info
PubMed 
U4/U6 x U5 tri-snRNP complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
zinc finger matrin-type protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_144723.2NP_653324.1  zinc finger matrin-type protein 2

    See identical proteins and their annotated locations for NP_653324.1

    Status: VALIDATED

    Source sequence(s)
    AA071274, AK055683, BP210985, BP370587
    Consensus CDS
    CCDS4239.1
    UniProtKB/Swiss-Prot
    Q96NC0
    Related
    ENSP00000274712.2, OTTHUMP00000272444, ENST00000274712.7, OTTHUMT00000468143
    Conserved Domains (1) summary
    smart00451
    Location:77108
    ZnF_U1; U1-like zinc finger

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p12 Primary Assembly

    Range
    140700360..140706681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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