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C6h14orf180 similar to human chromosome 14 open reading frame 180 [ Rattus norvegicus (Norway rat) ]

Gene ID: 691485, updated on 5-Mar-2024

Summary

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Official Symbol
C6h14orf180provided by RGD
Official Full Name
similar to human chromosome 14 open reading frame 180provided by RGD
Primary source
RGD:1583888
See related
Ensembl:ENSRNOG00000013097 AllianceGenome:RGD:1583888
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human C14orf180 (chromosome 14 open reading frame 180). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 231.5), Adrenal (RPKM 136.8) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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See C6h14orf180 in Genome Data Viewer
Location:
6q32
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (137378336..137393892)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (131557193..131568245)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (137063532..137073406)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479481 Neighboring gene uncharacterized LOC102549170 Neighboring gene transmembrane protein 179 Neighboring gene uncharacterized LOC102552388 Neighboring gene inverted formin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Nrac, a novel nutritionally-regulated adipose and cardiac-enriched gene. Zhang R, et al. PLoS One, 2012. PMID 23029450, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
nutritionally-regulated adipose and cardiac enriched protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    137378336..137393892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039113399.2 → XP_038969327.1  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X3

    Conserved Domains (1) summary
    cl20010
    Location:46 → 105
    Consortin_C; Consortin C-terminus

  2. XM_039113396.2 → XP_038969324.1  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X2

    UniProtKB/TrEMBL
    A6KBV0, D3ZEU6
    Conserved Domains (1) summary
    pfam15555
    Location:33 → 165
    DUF4658; Domain of unknown function (DUF4658)

  3. XM_039113393.2 → XP_038969321.1  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X1

    Conserved Domains (1) summary
    pfam15555
    Location:46 → 178
    DUF4658; Domain of unknown function (DUF4658)

  4. XM_039113395.2 → XP_038969323.1  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X2

    UniProtKB/TrEMBL
    A6KBV0, D3ZEU6
    Conserved Domains (1) summary
    pfam15555
    Location:33 → 165
    DUF4658; Domain of unknown function (DUF4658)

  5. XM_039113398.2 → XP_038969326.1  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X2

    UniProtKB/TrEMBL
    A6KBV0, D3ZEU6
    Conserved Domains (1) summary
    pfam15555
    Location:33 → 165
    DUF4658; Domain of unknown function (DUF4658)

  6. XM_039113394.2 → XP_038969322.1  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X2

    UniProtKB/TrEMBL
    A6KBV0, D3ZEU6
    Conserved Domains (1) summary
    pfam15555
    Location:33 → 165
    DUF4658; Domain of unknown function (DUF4658)

  7. XM_001078490.7 → XP_001078490.2  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X2

    See identical proteins and their annotated locations for XP_001078490.2

    UniProtKB/TrEMBL
    A6KBV0, D3ZEU6
    Related
    ENSRNOP00000017504.3
    Conserved Domains (1) summary
    pfam15555
    Location:33 → 165
    DUF4658; Domain of unknown function (DUF4658)

  8. XM_006240652.5 → XP_006240714.1  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X2

    See identical proteins and their annotated locations for XP_006240714.1

    UniProtKB/TrEMBL
    A6KBV0, D3ZEU6
    Conserved Domains (1) summary
    pfam15555
    Location:33 → 165
    DUF4658; Domain of unknown function (DUF4658)
Nucleotide Protein Strain
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