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kat-60L1 katanin p60-like 1 [ Drosophila yakuba ]

Gene ID: 6537531, updated on 22-May-2024

Summary

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Gene symbol
kat-60L1
Gene description
katanin p60-like 1
Locus tag
Dyak_GE10164
See related
EnsemblRapid:LOC6537531
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila yakuba
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GE10164; GE10164-PA; GE10164-PB; GE10164-PC; GE10164-PD; GE10164-PE
Orthologs
fruit fly all
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Genomic context

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See kat-60L1 in Genome Data Viewer
Location:
chromosome: 3R
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Prin_Dyak_Tai18E2_2.1 (GCF_016746365.2) 3R NC_052530.2 (19356388..19362233)
101 previous assembly Prin_Dyak_Tai18E2_2.0 (GCF_016746365.1) 3R NC_052530.1 (19356438..19362149)

Chromosome 3R - NC_052530.2Genomic Context describing neighboring genes Neighboring gene exocyst complex component 4 Neighboring gene Decapping enzyme, scavenger Neighboring gene protein jagunal Neighboring gene histone acetyltransferase 1 Neighboring gene histone PARylation factor 1-like Neighboring gene regulatory particle non-ATPase 5 Neighboring gene Proteasome assembly chaperone 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule severing ATPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule severing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
katanin p60 ATPase-containing subunit A1
Names
Dyak\GE10164
Dyak\GE10164-PA
Dyak\GE10164-PB
Dyak\GE10164-PC
Dyak\GE10164-PD
Dyak\GE10164-PE
dyak_GLEANR_10113

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila yakuba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

Genomic

  1. NC_052530.2 Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

    Range
    19356388..19362233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015192910.3 → XP_015048396.1  katanin p60 ATPase-containing subunit A1 isoform X4

    UniProtKB/TrEMBL
    A0A0R1E405
    Related
    XP_015048396.1, XM_015192910.3
    Conserved Domains (3) summary
    smart00382
    Location:364 → 503
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:368 → 501
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:576 → 609
    Vps4_C; Vps4 C terminal oligomerization domain

  2. XM_015192912.3 → XP_015048398.1  katanin p60 ATPase-containing subunit A1 isoform X5

    UniProtKB/TrEMBL
    A0A0R1E8U3
    Related
    XP_015048398.1, XM_015192912.3
    Conserved Domains (3) summary
    smart00382
    Location:360 → 499
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:364 → 497
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:572 → 605
    Vps4_C; Vps4 C terminal oligomerization domain

  3. XM_015192911.3 → XP_015048397.1  katanin p60 ATPase-containing subunit A1 isoform X2

    UniProtKB/TrEMBL
    A0A0R1E871
    Related
    XP_015048397.1, XM_015192911.3
    Conserved Domains (3) summary
    smart00382
    Location:422 → 561
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:426 → 559
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:634 → 667
    Vps4_C; Vps4 C terminal oligomerization domain

  4. XM_002098041.4 → XP_002098077.1  katanin p60 ATPase-containing subunit A1 isoform X1

    See identical proteins and their annotated locations for XP_002098077.1

    UniProtKB/TrEMBL
    B4PUY2
    Related
    XP_002098077.1, XM_002098041.4
    Conserved Domains (3) summary
    smart00382
    Location:425 → 564
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:429 → 562
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:637 → 670
    Vps4_C; Vps4 C terminal oligomerization domain

  5. XM_015192913.3 → XP_015048399.1  katanin p60 ATPase-containing subunit A1 isoform X3

    UniProtKB/TrEMBL
    A0A0R1E714
    Related
    XP_015048399.1, XM_015192913.3
    Conserved Domains (3) summary
    smart00382
    Location:421 → 560
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:425 → 558
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:633 → 666
    Vps4_C; Vps4 C terminal oligomerization domain
Nucleotide Protein Strain
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