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TATDN3 TatD DNase domain containing 3 [ Bos taurus (domestic cattle) ]

Gene ID: 615965, updated on 18-Aug-2024

Summary

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Official Symbol
TATDN3provided by VGNC
Official Full Name
TatD DNase domain containing 3provided by VGNC
Primary source
VGNC:VGNC:35618
See related
Ensembl:ENSBTAG00000024443
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (70756214..70770955, complement)

Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132342501 Neighboring gene FLVCR heme transporter 1 Neighboring gene spermatogenesis associated 45 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene NSL1 component of MIS12 kinetochore complex Neighboring gene basic leucine zipper ATF-like transcription factor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC155057

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative deoxyribonuclease TATDN3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080320.1 → NP_001073789.1  putative deoxyribonuclease TATDN3

    See identical proteins and their annotated locations for NP_001073789.1

    Status: PROVISIONAL

    Source sequence(s)
    BC126724
    UniProtKB/Swiss-Prot
    A1A4M4
    UniProtKB/TrEMBL
    A0AAF6ZIH9
    Related
    ENSBTAP00000048497.3, ENSBTAT00000052023.4
    Conserved Domains (2) summary
    COG1099
    Location:9 → 264
    COG1099; Predicted metal-dependent hydrolase, TIM-barrel fold [General function prediction only]
    pfam01026
    Location:9 → 264
    TatD_DNase; TatD related DNase

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    70756214..70770955 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010813583.4 → XP_010811885.1  putative deoxyribonuclease TATDN3 isoform X2

    UniProtKB/TrEMBL
    A0AAA9RW36
    Related
    ENSBTAP00000075255.1, ENSBTAT00000124991.1
    Conserved Domains (2) summary
    COG1099
    Location:9 → 254
    COG1099; Predicted metal-dependent hydrolase, TIM-barrel fold [General function prediction only]
    pfam01026
    Location:9 → 254
    TatD_DNase; TatD related DNase

  2. XM_059875536.1 → XP_059731519.1  putative deoxyribonuclease TATDN3 isoform X5

    UniProtKB/TrEMBL
    A0AAA9U185
    Related
    ENSBTAP00000103802.1, ENSBTAT00000115214.1

  3. XM_059875535.1 → XP_059731518.1  putative deoxyribonuclease TATDN3 isoform X4

  4. XM_005217394.5 → XP_005217451.1  putative deoxyribonuclease TATDN3 isoform X1

    See identical proteins and their annotated locations for XP_005217451.1

    UniProtKB/TrEMBL
    A0AAF6ZIH9
    Conserved Domains (2) summary
    COG1099
    Location:9 → 265
    COG1099; Predicted metal-dependent hydrolase, TIM-barrel fold [General function prediction only]
    pfam01026
    Location:9 → 265
    TatD_DNase; TatD related DNase

  5. XM_059875534.1 → XP_059731517.1  putative deoxyribonuclease TATDN3 isoform X3

    UniProtKB/TrEMBL
    A0AAA9RW36
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1A4M4.1 GenPept UniProtKB/Swiss-Prot:A1A4M4

Gene LinkOut

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