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TICRR TOPBP1 interacting checkpoint and replication regulator [ Canis lupus familiaris (dog) ]

Gene ID: 609269, updated on 17-Aug-2024

Summary

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Official Symbol
TICRRprovided by VGNC
Official Full Name
TOPBP1 interacting checkpoint and replication regulatorprovided by VGNC
Primary source
VGNC:VGNC:47365
See related
Ensembl:ENSCAFG00845000341
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
C3H15orf42
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 3 NC_051807.1 (53000604..53046170)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 3 NC_006585.4 (55218464..55263804)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 3 NC_049224.1 (53073123..53118437)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 3 NC_049263.1 (52522964..52568260)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 3 NC_049744.1 (52733097..52778304)

Chromosome 3 - NC_051807.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111095222 Neighboring gene Rh family C glycoprotein Neighboring gene uncharacterized LOC102153997 Neighboring gene serine/arginine-rich splicing factor 10-like Neighboring gene uncharacterized LOC119871207 Neighboring gene kinesin family member 7 Neighboring gene perilipin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic DNA replication checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic G2 DNA damage checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated DNA replication initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to ionizing radiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
treslin; LOW QUALITY PROTEIN: treslin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051807.1 Reference ROS_Cfam_1.0

    Range
    53000604..53046170
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038661334.1 → XP_038517262.1  treslin isoform X2

    UniProtKB/TrEMBL
    A0A8C0MAH8, A0A8C0Q266, A0A8I3MFW0
    Related
    ENSCAFP00845000364.1, ENSCAFT00845000529.1
    Conserved Domains (2) summary
    PHA03247
    Location:1087 → 1428
    PHA03247; large tegument protein UL36; Provisional
    pfam15292
    Location:211 → 1000
    Treslin_N; Treslin N-terminus

  2. XM_038661335.1 → XP_038517263.1  treslin isoform X1

    UniProtKB/TrEMBL
    A0A8C0Q266
    Conserved Domains (2) summary
    PHA03247
    Location:1087 → 1428
    PHA03247; large tegument protein UL36; Provisional
    pfam15292
    Location:211 → 1000
    Treslin_N; Treslin N-terminus

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049263.1 Alternate UMICH_Zoey_3.1

    Range
    52522964..52568260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038471900.1 → XP_038327828.1  LOW QUALITY PROTEIN: treslin isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049744.1 Alternate UNSW_CanFamBas_1.0

    Range
    52733097..52778304
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038597155.1 → XP_038453083.1  LOW QUALITY PROTEIN: treslin isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049224.1 Alternate UU_Cfam_GSD_1.0

    Range
    53073123..53118437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038532829.1 → XP_038388757.1  treslin isoform X2

    UniProtKB/TrEMBL
    A0A8C0Q266

  2. XM_038532830.1 → XP_038388758.1  treslin isoform X1

    UniProtKB/TrEMBL
    A0A8C0Q266

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    55218464..55263804
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_846499.5 → XP_851592.2  treslin isoform X2

    UniProtKB/TrEMBL
    A0A8C0MAH8, A0A8C0Q266, A0A8I3MFW0
    Conserved Domains (2) summary
    PHA03247
    Location:1087 → 1428
    PHA03247; large tegument protein UL36; Provisional
    pfam15292
    Location:211 → 1000
    Treslin_N; Treslin N-terminus

  2. XM_014112420.3 → XP_013967895.1  treslin isoform X1

    UniProtKB/TrEMBL
    A0A8C0Q266
    Conserved Domains (2) summary
    PHA03247
    Location:1087 → 1428
    PHA03247; large tegument protein UL36; Provisional
    pfam15292
    Location:211 → 1000
    Treslin_N; Treslin N-terminus
Nucleotide Protein
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