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RNASEH2B ribonuclease H2 subunit B [ Canis lupus familiaris (dog) ]

Gene ID: 607281, updated on 5-Mar-2024

Summary

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Official Symbol
RNASEH2Bprovided by VGNC
Official Full Name
ribonuclease H2 subunit Bprovided by VGNC
Primary source
VGNC:VGNC:45613
See related
Ensembl:ENSCAFG00845022142
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See RNASEH2B in Genome Data Viewer
Location:
chromosome: 22
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 22 NC_051826.1 (933922..992941, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 22 NC_006604.4 (974899..1043575, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 22 NC_049243.1 (922842..981538, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 22 NC_049282.1 (855278..913961, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 22 NC_049763.1 (894348..961862, complement)

Chromosome 22 - NC_051826.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111091792 Neighboring gene guanylate cyclase soluble subunit beta-2-like Neighboring gene uncharacterized LOC111091782 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribonucleotide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonuclease H2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribonuclease H2 subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051826.1 Reference ROS_Cfam_1.0

    Range
    933922..992941 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038430840.1 → XP_038286768.1  ribonuclease H2 subunit B isoform X1

    UniProtKB/TrEMBL
    A0A8C0JGB1, A0A8C0S0X5, A0A8I3PNY0
    Related
    ENSCAFP00845030885.1, ENSCAFT00845039413.1
    Conserved Domains (1) summary
    cd09270
    Location:13 → 294
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  2. XM_038430839.1 → XP_038286767.1  ribonuclease H2 subunit B isoform X2

    UniProtKB/TrEMBL
    A0A8C0NSP3
    Conserved Domains (1) summary
    cd09270
    Location:70 → 335
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  3. XM_038430841.1 → XP_038286769.1  ribonuclease H2 subunit B isoform X3

    UniProtKB/TrEMBL
    A0A8C0S0X5, A0A8P0P0A2
    Conserved Domains (1) summary
    cd09270
    Location:3 → 268
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  4. XM_038430842.1 → XP_038286770.1  ribonuclease H2 subunit B isoform X4

    UniProtKB/TrEMBL
    A0A8C0S0X5
    Conserved Domains (1) summary
    cd09270
    Location:7 → 260
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049282.1 Alternate UMICH_Zoey_3.1

    Range
    855278..913961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038506231.1 → XP_038362159.1  ribonuclease H2 subunit B isoform X1

    Conserved Domains (1) summary
    cd09270
    Location:13 → 294
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  2. XM_038506230.1 → XP_038362158.1  ribonuclease H2 subunit B isoform X2

    Conserved Domains (1) summary
    cd09270
    Location:70 → 335
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  3. XM_038506232.1 → XP_038362160.1  ribonuclease H2 subunit B isoform X3

    Conserved Domains (1) summary
    cd09270
    Location:3 → 268
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  4. XM_038506234.1 → XP_038362162.1  ribonuclease H2 subunit B isoform X4

    Conserved Domains (1) summary
    cd09270
    Location:7 → 260
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049763.1 Alternate UNSW_CanFamBas_1.0

    Range
    894348..961862 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038633567.1 → XP_038489495.1  ribonuclease H2 subunit B isoform X5

  2. XM_038633566.1 → XP_038489494.1  ribonuclease H2 subunit B isoform X2

    Conserved Domains (1) summary
    cd09270
    Location:70 → 335
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  3. XM_038633568.1 → XP_038489496.1  ribonuclease H2 subunit B isoform X3

    Conserved Domains (1) summary
    cd09270
    Location:3 → 268
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  4. XM_038633570.1 → XP_038489498.1  ribonuclease H2 subunit B isoform X6

  5. XM_038633569.1 → XP_038489497.1  ribonuclease H2 subunit B isoform X4

    Conserved Domains (1) summary
    cd09270
    Location:7 → 260
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049243.1 Alternate UU_Cfam_GSD_1.0

    Range
    922842..981538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038569418.1 → XP_038425346.1  ribonuclease H2 subunit B isoform X1

    UniProtKB/TrEMBL
    A0A8C0JGB1, A0A8C0S0X5, A0A8I3PNY0
    Conserved Domains (1) summary
    cd09270
    Location:13 → 294
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  2. XM_038569417.1 → XP_038425345.1  ribonuclease H2 subunit B isoform X2

    UniProtKB/TrEMBL
    A0A8C0NSP3
    Conserved Domains (1) summary
    cd09270
    Location:70 → 335
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  3. XM_038569419.1 → XP_038425347.1  ribonuclease H2 subunit B isoform X3

    UniProtKB/TrEMBL
    A0A8C0S0X5, A0A8P0P0A2
    Conserved Domains (1) summary
    cd09270
    Location:3 → 268
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  4. XM_038569420.1 → XP_038425348.1  ribonuclease H2 subunit B isoform X4

    UniProtKB/TrEMBL
    A0A8C0S0X5
    Conserved Domains (1) summary
    cd09270
    Location:7 → 260
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006604.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    974899..1043575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022408241.2 → XP_022263949.1  ribonuclease H2 subunit B isoform X8

    UniProtKB/TrEMBL
    A0A8C0QK32, A0A8I3PER5
    Conserved Domains (1) summary
    pfam09468
    Location:3 → 197
    RNase_H2-Ydr279; Ydr279p protein family (RNase H2 complex component)

  2. XM_038456763.1 → XP_038312691.1  ribonuclease H2 subunit B isoform X7

    UniProtKB/TrEMBL
    A0A8C0S0X5
    Conserved Domains (1) summary
    cd09270
    Location:45 → 298
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  3. XM_038456762.1 → XP_038312690.1  ribonuclease H2 subunit B isoform X2

    UniProtKB/TrEMBL
    A0A8C0NSP3
    Conserved Domains (1) summary
    cd09270
    Location:70 → 335
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  4. XM_014106397.3 → XP_013961872.2  ribonuclease H2 subunit B isoform X3

    UniProtKB/TrEMBL
    A0A8C0S0X5, A0A8P0P0A2
    Conserved Domains (1) summary
    cd09270
    Location:3 → 268
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  5. XM_014106399.3 → XP_013961874.1  ribonuclease H2 subunit B isoform X9

    Conserved Domains (1) summary
    cl18968
    Location:1 → 208
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  6. XM_038456764.1 → XP_038312692.1  ribonuclease H2 subunit B isoform X4

    UniProtKB/TrEMBL
    A0A8C0S0X5
    Conserved Domains (1) summary
    cd09270
    Location:7 → 260
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids
Nucleotide Protein
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