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CC1G_13660 PRT1p [ Coprinopsis cinerea okayama7#130 ]

Gene ID: 6008519, updated on 17-May-2024

Summary

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Gene symbol
CC1G_13660
Gene description
PRT1p
Primary source
FungiDB:CC1G_13660
Locus tag
CC1G_13660
See related
VEuPathDB:CC1G_13660
Gene type
protein coding
RNA name
PRT1p
RefSeq status
PROVISIONAL
Organism
Coprinopsis cinerea okayama7#130 (strain: okayama7#130)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Psathyrellaceae; Coprinopsis
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Genomic context

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See CC1G_13660 in Genome Data Viewer
Location:
chromosome: 1, map: unlocalized
Exon count:
9

NW_003307544.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003307544.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Stajich JE, et al. Proc Natl Acad Sci U S A, 2010 Jun 29. PMID 20547848, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of eukaryotic translation initiation factor 3 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
PRT1p

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003307544.1 Reference assembly

    Range
    1837770..1840453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002912082.1 → XP_002912128.1  PRT1p [Coprinopsis cinerea okayama7#130]

    See identical proteins and their annotated locations for XP_002912128.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D6RJS7
    Conserved Domains (5) summary
    COG0724
    Location:13 → 117
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    COG2319
    Location:148 → 347
    WD40; WD40 repeat [General function prediction only]
    cd12278
    Location:27 → 112
    RRM_eIF3B; RNA recognition motif in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar proteins
    pfam08662
    Location:403 → 625
    eIF2A; Eukaryotic translation initiation factor eIF2A
    sd00039
    Location:462 → 516
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
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