U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

bcl7a BAF chromatin remodeling complex subunit BCL7A [ Danio rerio (zebrafish) ]

Gene ID: 57952, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
bcl7aprovided by ZNC
Official Full Name
BAF chromatin remodeling complex subunit BCL7Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-000607-16
See related
Ensembl:ENSDARG00000052907 AllianceGenome:ZFIN:ZDB-GENE-000607-16
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb585; sb:cb585; zgc:92023; id:ibd1097; wu:fk02d01
Summary
Is expressed in central nervous system; retina; and tail bud. Orthologous to human BCL7A (BAF chromatin remodeling complex subunit BCL7A). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (41793006..41799882)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (41192853..41199729)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100334916 Neighboring gene cilia and flagella associated protein 251 Neighboring gene alkB homolog 2, alpha-ketoglutarate dependent dioxygenase Neighboring gene si:dkey-65b12.6 Neighboring gene si:dkey-65b12.12

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation. Rösel TD, et al. EMBO J, 2011 May 18. PMID 21468032, Free PMC Article
  2. A gene expression screen in zebrafish embryogenesis. Kudoh T, et al. Genome Res, 2001 Dec. PMID 11731487
  3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC92023

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
B-cell CLL/lymphoma 7 protein family member A
Names
B-cell CLL/lymphoma 7A
BCL tumor suppressor 7A
BCL7A, BAF complex component

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212560.1 → NP_997725.1  B-cell CLL/lymphoma 7 protein family member A

    See identical proteins and their annotated locations for NP_997725.1

    Status: PROVISIONAL

    Source sequence(s)
    AY394963
    UniProtKB/Swiss-Prot
    Q5XFY4, Q6TLE3
    Related
    ENSDARP00000146672.1, ENSDART00000190477.1
    Conserved Domains (1) summary
    pfam04714
    Location:4 → 50
    BCL_N; BCL7, N-terminal conserver region

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    41793006..41799882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005165362.4 → XP_005165419.1  B-cell CLL/lymphoma 7 protein family member A isoform X1

    UniProtKB/Swiss-Prot
    Q5XFY4, Q6TLE3
    UniProtKB/TrEMBL
    A0A8M2BCN4, A3QK39
    Related
    ENSDARP00000114813.1, ENSDART00000136439.2
    Conserved Domains (1) summary
    pfam04714
    Location:4 → 50
    BCL_N; BCL7, N-terminal conserver region

  2. XM_021476311.1 → XP_021331986.1  B-cell CLL/lymphoma 7 protein family member A isoform X2

    UniProtKB/Swiss-Prot
    Q5XFY4, Q6TLE3
    UniProtKB/TrEMBL
    A0A8M9Q904
    Conserved Domains (1) summary
    pfam04714
    Location:2 → 20
    BCL_N; BCL7, N-terminal conserver region

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394603.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    38764..45577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5XFY4.1 GenPept UniProtKB/Swiss-Prot:Q5XFY4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous