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tsnaxip1 translin-associated factor X interacting protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 565917, updated on 27-Mar-2024

Summary

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Official Symbol
tsnaxip1provided by ZNC
Official Full Name
translin-associated factor X interacting protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-070424-39
See related
Ensembl:ENSDARG00000030512 AllianceGenome:ZFIN:ZDB-GENE-070424-39
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fc26b06; zgc:162756
Summary
Predicted to act upstream of or within establishment or maintenance of cell polarity. Predicted to be located in bicellular tight junction and membrane. Predicted to be active in cytoplasm. Orthologous to human TSNAXIP1 (translin associated factor X interacting protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See tsnaxip1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
17
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (21931733..21950751, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (21942667..21961685, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene neuritin 1-like a Neighboring gene enhancer of mRNA decapping 4 Neighboring gene nuclear transport factor 2 Neighboring gene RAN binding protein 10 Neighboring gene par-6 family cell polarity regulator alpha Neighboring gene uncharacterized LOC100320750

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine. Webb KJ, et al. Genome Biol, 2009. PMID 19646228, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
translin-associated factor X-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100100.1 → NP_001093570.1  translin-associated factor X-interacting protein 1

    Status: PROVISIONAL

    Source sequence(s)
    CT025923
    UniProtKB/TrEMBL
    A0A8M1NFA9, A5WVR3
    Related
    ENSDARP00000043451.7, ENSDART00000043452.8
    Conserved Domains (1) summary
    pfam15739
    Location:89 → 192
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    21931733..21950751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009293577.2 → XP_009291852.1  translin-associated factor X-interacting protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M3B2V9
    Conserved Domains (1) summary
    pfam15739
    Location:88 → 191
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395341.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    302202..331847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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