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btbd3b BTB (POZ) domain containing 3b [ Danio rerio (zebrafish) ]

Gene ID: 562593, updated on 11-Apr-2024

Summary

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Official Symbol
btbd3bprovided by ZNC
Official Full Name
BTB (POZ) domain containing 3bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041210-282
See related
Ensembl:ENSDARG00000087517 AllianceGenome:ZFIN:ZDB-GENE-041210-282
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-246k9.2
Summary
Predicted to be involved in dendrite morphogenesis. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human BTBD3 (BTB domain containing 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (35041172..35052419, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (34915471..34926388, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene isthmin 1 Neighboring gene serine palmitoyltransferase, long chain base subunit 3 Neighboring gene uncharacterized LOC101882067 Neighboring gene jagged canonical Notch ligand 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A feedback loop mediated by degradation of an inhibitor is required to initiate neuronal differentiation. Sobieszczuk DF, et al. Genes Dev, 2010 Jan 15. PMID 20080956, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in cerebral cortex development IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in dendrite morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in neurogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
BTB/POZ domain-containing protein 3
Names
BTB/POZ domain containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    35041172..35052419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009307448.3 → XP_009305723.1  BTB/POZ domain-containing protein 3

    See identical proteins and their annotated locations for XP_009305723.1

    UniProtKB/TrEMBL
    A0A8M1RMF5
    Related
    ENSDARP00000109601.2, ENSDART00000129559.3
    Conserved Domains (4) summary
    smart00225
    Location:116 → 215
    BTB; Broad-Complex, Tramtrack and Bric a brac
    smart00875
    Location:221 → 327
    BACK; BTB And C-terminal Kelch
    pfam00651
    Location:108 → 211
    BTB; BTB/POZ domain
    pfam08005
    Location:372 → 515
    PHR; PHR domain

  2. XM_003199736.5 → XP_003199784.1  BTB/POZ domain-containing protein 3

    See identical proteins and their annotated locations for XP_003199784.1

    UniProtKB/TrEMBL
    A0A8M1RMF5
    Conserved Domains (4) summary
    smart00225
    Location:116 → 215
    BTB; Broad-Complex, Tramtrack and Bric a brac
    smart00875
    Location:221 → 327
    BACK; BTB And C-terminal Kelch
    pfam00651
    Location:108 → 211
    BTB; BTB/POZ domain
    pfam08005
    Location:372 → 515
    PHR; PHR domain
Nucleotide Protein
Heading Accession and Version

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