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borcs7 BLOC-1 related complex subunit 7 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549583, updated on 5-Mar-2024

Summary

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Official Symbol
borcs7provided by Xenbase
Official Full Name
BLOC-1 related complex subunit 7provided by Xenbase
Primary source
Xenbase:XB-GENE-1006807
See related
Ensembl:ENSXETG00000037489
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
c10orf32
Orthologs
human mouse all
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Genomic context

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See borcs7 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (28903347..28909373)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (20675433..20681360)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108648187 Neighboring gene arsenite methyltransferase, gene 2 Neighboring gene arsenite methyltransferase Neighboring gene cytochrome P450 family 17 subfamily A member 1 Neighboring gene WW domain binding protein 1 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
part_of BORC complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
BLOC-1-related complex subunit 7
Names
UPF0693 protein C10orf32 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016829.3 → NP_001016829.1  BLOC-1-related complex subunit 7

    See identical proteins and their annotated locations for NP_001016829.1

    Status: PROVISIONAL

    Source sequence(s)
    BC091604
    UniProtKB/Swiss-Prot
    Q28DH3, Q5BJ66
    UniProtKB/TrEMBL
    A0A6I8S980
    Related
    ENSXETP00000093434.1, ENSXETT00000104581.2
    Conserved Domains (1) summary
    pfam16088
    Location:10 → 110
    BORCS7; BLOC-1-related complex sub-unit 7

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    28903347..28909373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012966636.3 → XP_012822090.1  BLOC-1-related complex subunit 7 isoform X2

    UniProtKB/Swiss-Prot
    Q28DH3, Q5BJ66
    UniProtKB/TrEMBL
    A0A8J0SSJ0
    Conserved Domains (1) summary
    pfam16088
    Location:10 → 103
    BORCS7; BLOC-1-related complex sub-unit 7

  2. XM_031905096.1 → XP_031760956.1  BLOC-1-related complex subunit 7 isoform X1

    UniProtKB/Swiss-Prot
    Q28DH3, Q5BJ66
    UniProtKB/TrEMBL
    A0A6I8S980
    Conserved Domains (1) summary
    pfam16088
    Location:10 → 110
    BORCS7; BLOC-1-related complex sub-unit 7
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q28DH3.1 GenPept UniProtKB/Swiss-Prot:Q28DH3

Gene LinkOut

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