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Borcs7 BLOC-1 related complex subunit 7 [ Mus musculus (house mouse) ]

Gene ID: 66439, updated on 12-May-2024

Summary

Official Symbol
Borcs7provided by MGI
Official Full Name
BLOC-1 related complex subunit 7provided by MGI
Primary source
MGI:MGI:1913689
See related
Ensembl:ENSMUSG00000062376 AllianceGenome:MGI:1913689
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2010012O05Rik; 4930569L17Rik
Summary
Predicted to be located in lysosome and membrane. Predicted to be part of BORC complex. Used to study hereditary spastic paraplegia and neuroaxonal dystrophy. Orthologous to human BORCS7 (BLOC-1 related complex subunit 7). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in frontal lobe adult (RPKM 5.2), cortex adult (RPKM 4.8) and 28 other tissues See more
Orthologs
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Genomic context

See Borcs7 in Genome Data Viewer
Location:
19 C3; 19 38.97 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (46678345..46691821)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (46689906..46703382)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene Cyp17a1 promoter Neighboring gene cytochrome P450, family 17, subfamily a, polypeptide 1 Neighboring gene predicted gene, 41857 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene arsenite methyltransferase Neighboring gene STARR-positive B cell enhancer ABC_E8753 Neighboring gene cyclin M2 Neighboring gene STARR-seq mESC enhancer starr_46325 Neighboring gene STARR-seq mESC enhancer starr_46328

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
part_of BORC complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of BORC complex ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasmic side of lysosomal membrane NAS
Non-traceable Author Statement
more info
PubMed 
is_active_in lysosome IMP
Inferred from Mutant Phenotype
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
BLOC-1-related complex subunit 7
Names
UPF0693 protein C10orf32 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025563.3NP_079839.1  BLOC-1-related complex subunit 7

    See identical proteins and their annotated locations for NP_079839.1

    Status: VALIDATED

    Source sequence(s)
    AC161865
    Consensus CDS
    CCDS38011.1
    UniProtKB/Swiss-Prot
    Q9CRC6
    Related
    ENSMUSP00000074447.8, ENSMUST00000074912.8
    Conserved Domains (1) summary
    pfam16088
    Location:1103
    BORCS7; BLOC-1-related complex sub-unit 7

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    46678345..46691821
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)