U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

nudcd1 NudC domain containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549375, updated on 5-Mar-2024

Summary

Official Symbol
nudcd1provided by Xenbase
Official Full Name
NudC domain containing 1provided by Xenbase
Primary source
Xenbase:XB-GENE-478841
See related
Ensembl:ENSXETG00000010497
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
Cml66; lin41; trim71
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See nudcd1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (133982119..134103389, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (116089102..116159481)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 74 Neighboring gene thyrotropin releasing hormone receptor Neighboring gene enhancer of yellow 2 homolog Neighboring gene PKHD1 like 1, gene 1

Genomic regions, transcripts, and products

General protein information

Preferred Names
nudC domain-containing protein 1
Names
E3 ubiquitin-protein ligase TRIM71
Protein lin-41 homolog
RING-type E3 ubiquitin transferase TRIM71
Tripartite motif-containing protein 71
NP_001016621.1
XP_031759244.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016621.2NP_001016621.1  nudC domain-containing protein 1

    See identical proteins and their annotated locations for NP_001016621.1

    Status: PROVISIONAL

    Source sequence(s)
    CR760498
    UniProtKB/Swiss-Prot
    Q28IB1
    UniProtKB/TrEMBL
    A0A5S6LM29
    Related
    ENSXETP00000023025.5, ENSXETT00000023025.5
    Conserved Domains (1) summary
    cl00175
    Location:280364
    alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    133982119..134103389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031903384.1XP_031759244.1  nudC domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5S6LM29, A0A8J1JMY3
    Conserved Domains (1) summary
    cl00175
    Location:280364
    alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.