ube2w ubiquitin conjugating enzyme E2W (putative) [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: ube2wprovided by Xenbase
Official Full Name: ubiquitin conjugating enzyme E2W (putative)provided by Xenbase
Primary source: Xenbase:XB-GENE-954746
See related: Ensembl:ENSXETG00000038178
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 6

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	6	NC_030682.2 (121358157..121376497, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	6	NC_030682.1 (106491833..106509739, complement)

Chromosome 6 - NC_030682.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info
enables ubiquitin conjugating enzyme activity	IBA Inferred from Biological aspect of Ancestor more info
enables ubiquitin conjugating enzyme activity	IEA Inferred from Electronic Annotation more info
enables ubiquitin-protein transferase activity	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within DNA repair	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within cellular response to misfolded protein	ISS Inferred from Sequence or Structural Similarity more info
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within proteasome-mediated ubiquitin-dependent protein catabolic process	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within protein monoubiquitination	ISS Inferred from Sequence or Structural Similarity more info
involved_in protein polyubiquitination	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within protein quality control for misfolded or incompletely synthesized proteins	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within protein ubiquitination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: ubiquitin-conjugating enzyme E2 W

Names: E2 ubiquitin-conjugating enzyme W; N-terminal E2 ubiquitin-conjugating enzyme; Ubiquitin carrier protein W; Ubiquitin-protein ligase W

NP_001016132.1

EC 2.3.2.23

EC 2.3.2.25

XP_012820132.1

EC 2.3.2.23

EC 2.3.2.25

XP_012820133.1

EC 2.3.2.23

EC 2.3.2.25

XP_012820135.1

EC 2.3.2.23

EC 2.3.2.25

XP_017950133.1

EC 2.3.2.23

EC 2.3.2.25

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001016132.2 → NP_001016132.1 ubiquitin-conjugating enzyme E2 W

See identical proteins and their annotated locations for NP_001016132.1

Status: PROVISIONAL

Source sequence(s)

CR762043

UniProtKB/Swiss-Prot

Q28FC1

UniProtKB/TrEMBL

F6SB84

Related

ENSXETP00000082953.2, ENSXETT00000078039.2

Conserved Domains (1) summary

pfam00179
Location:7 → 148

UQ_con; Ubiquitin-conjugating enzyme

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

121358157..121376497 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_012964678.3 → XP_012820132.1 ubiquitin-conjugating enzyme E2 W isoform X1

UniProtKB/TrEMBL

A0A6I8RT66, F6SB84

Related

ENSXETP00000085923.2, ENSXETT00000089668.2

Conserved Domains (1) summary

pfam00179
Location:12 → 153

UQ_con; Ubiquitin-conjugating enzyme
XM_012964679.3 → XP_012820133.1 ubiquitin-conjugating enzyme E2 W isoform X2

See identical proteins and their annotated locations for XP_012820133.1

UniProtKB/TrEMBL

A9ULJ1, F6SB84

Conserved Domains (1) summary

pfam00179
Location:8 → 126

UQ_con; Ubiquitin-conjugating enzyme
XM_012964681.3 → XP_012820135.1 ubiquitin-conjugating enzyme E2 W isoform X2

See identical proteins and their annotated locations for XP_012820135.1

UniProtKB/TrEMBL

A9ULJ1, F6SB84

Conserved Domains (1) summary

pfam00179
Location:8 → 126

UQ_con; Ubiquitin-conjugating enzyme
XM_018094644.2 → XP_017950133.1 ubiquitin-conjugating enzyme E2 W isoform X2

UniProtKB/TrEMBL

A9ULJ1, F6SB84

Conserved Domains (1) summary

pfam00179
Location:8 → 126

UQ_con; Ubiquitin-conjugating enzyme