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PVX_089580 chaperone clpB 1, putative [ Plasmodium vivax (malaria parasite P. vivax) ]

Gene ID: 5474296, updated on 17-May-2024

Summary

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Gene symbol
PVX_089580
Gene description
chaperone clpB 1, putative
Primary source
PlasmoDB:PVX_089580
Locus tag
PVX_089580
See related
VEuPathDB:PVX_089580
Gene type
protein coding
RNA name
chaperone clpB 1, putative
RefSeq status
PROVISIONAL
Organism
Plasmodium vivax (strain: Salvador I)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium)
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Genomic context

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See PVX_089580 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_009910.1 (675838..679082)

Chromosome 5 - NC_009910.1Genomic Context describing neighboring genes Neighboring gene adenylate kinase, putative Neighboring gene meiotic recombination protein DMC1-like protein, putative Neighboring gene hypothetical protein, conserved Neighboring gene heat shock protein, putative Neighboring gene hypothetical protein, conserved

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009910.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Carlton JM, et al. Nature, 2008 Oct 9. PMID 18843361, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Repeated regions

  • Loc: 676153-676227 rpt_type = tandem , rpt_unit_seq = ta , satellite = microsatellite
  • Loc: 676415-676434 rpt_type = tandem , rpt_unit_seq = t , satellite = microsatellite

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to heat IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chaperone clpB 1, putative
XP_001615005.1
  • encoded by transcript PVX_089580A; Apicoplast targeted protein. Curated by Stuart Ralph, Walter and Eliza Hall Institute of Medical Research, Australia.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009910.1 Reference assembly

    Range
    675838..679082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001614955.1 → XP_001615005.1  chaperone clpB 1, putative [Plasmodium vivax]

    See identical proteins and their annotated locations for XP_001615005.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0J9SIM9, A0A0J9SZD3, A0A0J9THN5, A0A0J9TYG0, A0A1G4GTL7, A0A1G4H8W3, A5K5U3
    Conserved Domains (6) summary
    cd00009
    Location:191 → 352
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    TIGR03346
    Location:13 → 908
    chaperone_ClpB; ATP-dependent chaperone ClpB
    pfam02861
    Location:103 → 155
    Clp_N; Clp amino terminal domain, pathogenicity island component
    pfam07724
    Location:652 → 814
    AAA_2; AAA domain (Cdc48 subfamily)
    pfam10431
    Location:821 → 901
    ClpB_D2-small; C-terminal, D2-small domain, of ClpB protein
    cl21455
    Location:613 → 677
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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