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FIGNL1 fidgetin like 1 [ Bos taurus (cattle) ]

Gene ID: 538986, updated on 9-Mar-2024

Summary

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Official Symbol
FIGNL1provided by VGNC
Official Full Name
fidgetin like 1provided by VGNC
Primary source
VGNC:VGNC:29011
See related
BGD:BT19537; Ensembl:ENSBTAG00000001500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (5454402..5459030)

Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene growth factor receptor bound protein 10 Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene dopa decarboxylase Neighboring gene IKAROS family zinc finger 1 Neighboring gene uncharacterized LOC112446353

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule severing ATPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fidgetin-like protein 1
NP_001193643.1
XP_005205151.1
XP_005205152.1
XP_005205153.1
XP_005205154.1
XP_059741668.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001206714.1 → NP_001193643.1  fidgetin-like protein 1

    See identical proteins and their annotated locations for NP_001193643.1

    Status: VALIDATED

    Source sequence(s)
    NKLS02000004
    UniProtKB/TrEMBL
    F1MNE5
    Related
    ENSBTAP00000080317.1, ENSBTAT00000121617.1
    Conserved Domains (3) summary
    smart00382
    Location:436 → 572
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:440 → 570
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:634 → 674
    Vps4_C; Vps4 C terminal oligomerization domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    5454402..5459030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005205097.5 → XP_005205154.1  fidgetin-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005205154.1

    UniProtKB/TrEMBL
    F1MNE5
    Related
    ENSBTAP00000094578.1, ENSBTAT00000129485.1
    Conserved Domains (3) summary
    smart00382
    Location:436 → 572
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:440 → 570
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:634 → 674
    Vps4_C; Vps4 C terminal oligomerization domain

  2. XM_005205094.4 → XP_005205151.1  fidgetin-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005205151.1

    UniProtKB/TrEMBL
    F1MNE5
    Related
    ENSBTAP00000084958.1, ENSBTAT00000089355.1
    Conserved Domains (3) summary
    smart00382
    Location:436 → 572
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:440 → 570
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:634 → 674
    Vps4_C; Vps4 C terminal oligomerization domain

  3. XM_005205096.4 → XP_005205153.1  fidgetin-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005205153.1

    UniProtKB/TrEMBL
    F1MNE5
    Related
    ENSBTAP00000094187.1, ENSBTAT00000128915.1
    Conserved Domains (3) summary
    smart00382
    Location:436 → 572
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:440 → 570
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:634 → 674
    Vps4_C; Vps4 C terminal oligomerization domain

  4. XM_059885685.1 → XP_059741668.1  fidgetin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    F1MNE5

  5. XM_005205095.5 → XP_005205152.1  fidgetin-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005205152.1

    UniProtKB/TrEMBL
    F1MNE5
    Related
    ENSBTAP00000075496.1, ENSBTAT00000099667.1
    Conserved Domains (3) summary
    smart00382
    Location:436 → 572
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:440 → 570
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:634 → 674
    Vps4_C; Vps4 C terminal oligomerization domain
Nucleotide Protein Strain
Heading Accession and Version

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