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TJAP1 tight junction associated protein 1 [ Bos taurus (cattle) ]

Gene ID: 515620, updated on 5-Mar-2024

Summary

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Official Symbol
TJAP1provided by VGNC
Official Full Name
tight junction associated protein 1provided by VGNC
Primary source
VGNC:VGNC:35880
See related
BGD:BT16394; Ensembl:ENSBTAG00000011189
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See TJAP1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (17028430..17052407)

Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily C member 10 Neighboring gene uncharacterized LOC132343619 Neighboring gene delta like non-canonical Notch ligand 2 Neighboring gene leucine rich repeat containing 73 Neighboring gene Yip1 domain family member 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tight junction-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001192419.1 → NP_001179348.1  tight junction-associated protein 1

    See identical proteins and their annotated locations for NP_001179348.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000023
    UniProtKB/TrEMBL
    E1BFM9
    Related
    ENSBTAP00000035843.3, ENSBTAT00000035977.5
    Conserved Domains (2) summary
    pfam15453
    Location:276 → 547
    Pilt; Protein incorporated later into Tight Junctions
    cl25732
    Location:17 → 158
    SMC_N; RecF/RecN/SMC N terminal domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    17028430..17052407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015459797.2 → XP_015315283.1  tight junction-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M4E6
    Conserved Domains (2) summary
    pfam15453
    Location:286 → 557
    Pilt; Protein incorporated later into Tight Junctions
    cl25732
    Location:13 → 168
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_024983583.2 → XP_024839351.1  tight junction-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M4E6
    Conserved Domains (2) summary
    pfam15453
    Location:286 → 557
    Pilt; Protein incorporated later into Tight Junctions
    cl25732
    Location:13 → 168
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_005223429.4 → XP_005223486.1  tight junction-associated protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005223486.1

    UniProtKB/TrEMBL
    A0A3Q1M4E6
    Conserved Domains (2) summary
    pfam15453
    Location:286 → 557
    Pilt; Protein incorporated later into Tight Junctions
    cl25732
    Location:13 → 168
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_010818189.3 → XP_010816491.1  tight junction-associated protein 1 isoform X1

    See identical proteins and their annotated locations for XP_010816491.1

    UniProtKB/TrEMBL
    A0A3Q1M4E6
    Conserved Domains (2) summary
    pfam15453
    Location:286 → 557
    Pilt; Protein incorporated later into Tight Junctions
    cl25732
    Location:13 → 168
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_024983592.2 → XP_024839360.1  tight junction-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    E1BFM9
    Conserved Domains (2) summary
    pfam15453
    Location:276 → 547
    Pilt; Protein incorporated later into Tight Junctions
    cl25732
    Location:17 → 158
    SMC_N; RecF/RecN/SMC N terminal domain

  6. XM_005223430.4 → XP_005223487.1  tight junction-associated protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005223487.1

    UniProtKB/TrEMBL
    A0A3Q1M4E6
    Related
    ENSBTAP00000065080.1, ENSBTAT00000071156.2
    Conserved Domains (2) summary
    pfam15453
    Location:286 → 557
    Pilt; Protein incorporated later into Tight Junctions
    cl25732
    Location:13 → 168
    SMC_N; RecF/RecN/SMC N terminal domain

  7. XM_005223431.4 → XP_005223488.1  tight junction-associated protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005223488.1

    UniProtKB/TrEMBL
    A0A3Q1M4E6
    Conserved Domains (2) summary
    pfam15453
    Location:286 → 557
    Pilt; Protein incorporated later into Tight Junctions
    cl25732
    Location:13 → 168
    SMC_N; RecF/RecN/SMC N terminal domain

  8. XM_005223433.5 → XP_005223490.1  tight junction-associated protein 1 isoform X2

    See identical proteins and their annotated locations for XP_005223490.1

    UniProtKB/TrEMBL
    E1BFM9
    Conserved Domains (2) summary
    pfam15453
    Location:276 → 547
    Pilt; Protein incorporated later into Tight Junctions
    cl25732
    Location:17 → 158
    SMC_N; RecF/RecN/SMC N terminal domain

  9. XM_005223434.5 → XP_005223491.1  tight junction-associated protein 1 isoform X2

    See identical proteins and their annotated locations for XP_005223491.1

    UniProtKB/TrEMBL
    E1BFM9
    Conserved Domains (2) summary
    pfam15453
    Location:276 → 547
    Pilt; Protein incorporated later into Tight Junctions
    cl25732
    Location:17 → 158
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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