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TMEM116 transmembrane protein 116 [ Bos taurus (cattle) ]

Gene ID: 514512, updated on 5-Mar-2024

Summary

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Official Symbol
TMEM116provided by VGNC
Official Full Name
transmembrane protein 116provided by VGNC
Primary source
VGNC:VGNC:35953
See related
BGD:BT15714; Ensembl:ENSBTAG00000006659
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See TMEM116 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (62142242..62278881)

Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 25, NatB auxiliary subunit Neighboring gene U6 spliceosomal RNA Neighboring gene endoplasmic reticulum protein 29 Neighboring gene large ribosomal subunit protein uL22-like Neighboring gene disintegrin and metalloproteinase domain-containing protein 1a-like Neighboring gene disintegrin and metalloproteinase domain-containing protein 1a-like Neighboring gene disintegrin and metalloproteinase domain-containing protein 1a-like Neighboring gene a disintegrin and metallopeptidase domain 1a Neighboring gene MAPK activated protein kinase 5 Neighboring gene aldehyde dehydrogenase 2 family member Neighboring gene transfer RNA glycine (anticodon CCC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC127791

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adenylate cyclase-activating G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 116

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040528.2 → NP_001035618.1  transmembrane protein 116

    See identical proteins and their annotated locations for NP_001035618.1

    Status: PROVISIONAL

    Source sequence(s)
    BC103422
    UniProtKB/TrEMBL
    Q3SYS2

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    62142242..62278881
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059875980.1 → XP_059731963.1  transmembrane protein 116 isoform X4

    Related
    ENSBTAP00000075932.1, ENSBTAT00000102811.1

  2. XM_005217822.5 → XP_005217879.2  transmembrane protein 116 isoform X1

    UniProtKB/TrEMBL
    E1B984
    Related
    ENSBTAP00000096227.1, ENSBTAT00000102458.1

  3. XM_024977216.2 → XP_024832984.1  transmembrane protein 116 isoform X3

  4. XM_024977217.2 → XP_024832985.1  transmembrane protein 116 isoform X5

    Related
    ENSBTAP00000074693.1, ENSBTAT00000131966.1

  5. XM_059875981.1 → XP_059731964.1  transmembrane protein 116 isoform X6

  6. XM_005217821.5 → XP_005217878.1  transmembrane protein 116 isoform X2

    See identical proteins and their annotated locations for XP_005217878.1

    UniProtKB/TrEMBL
    E1BA96
    Related
    ENSBTAP00000075280.1, ENSBTAT00000094859.1

RNA

  1. XR_003029924.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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