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DDX1 DEAD-box helicase 1 [ Bos taurus (domestic cattle) ]

Gene ID: 510816, updated on 18-Aug-2024

Summary

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Official Symbol
DDX1provided by VGNC
Official Full Name
DEAD-box helicase 1provided by VGNC
Primary source
VGNC:VGNC:27955
See related
BGD:BT15817; Ensembl:ENSBTAG00000009906
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (82677432..82717536, complement)

Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon GAG) Neighboring gene MYCN proto-oncogene, bHLH transcription factor Neighboring gene NBAS subunit of NRZ tethering complex Neighboring gene secretoglobin family 1C member 1 Neighboring gene outer dense fiber of sperm tails 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Clone Names

  • MGC139331

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX1
Names
DEAD (Asp-Glu-Ala-Asp) box helicase 1
DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
DEAD box protein 1
DEAD/H-box helicase 1
NP_001068936.1
XP_059747147.1
XP_059747148.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001075468.1 → NP_001068936.1  ATP-dependent RNA helicase DDX1

    See identical proteins and their annotated locations for NP_001068936.1

    Status: PROVISIONAL

    Source sequence(s)
    BC122599
    UniProtKB/Swiss-Prot
    Q0IIK5
    UniProtKB/TrEMBL
    A0A452DIC5
    Related
    ENSBTAP00000013075.7, ENSBTAT00000013075.7
    Conserved Domains (4) summary
    COG0513
    Location:284 → 624
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    pfam00271
    Location:493 → 609
    Helicase_C; Helicase conserved C-terminal domain
    cd12873
    Location:93 → 245
    SPRY_DDX1; SPRY domain associated with DEAD box gene DDX1
    cl21455
    Location:284 → 426
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    82677432..82717536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059891164.1 → XP_059747147.1  ATP-dependent RNA helicase DDX1 isoform X1

    UniProtKB/TrEMBL
    A0A452DIC5, A7E3W7
    Related
    ENSBTAP00000099311.1, ENSBTAT00000111067.1

  2. XM_059891165.1 → XP_059747148.1  ATP-dependent RNA helicase DDX1 isoform X2

    UniProtKB/Swiss-Prot
    Q0IIK5
    UniProtKB/TrEMBL
    A0A452DIC5
    Related
    ENSBTAP00000091056.1, ENSBTAT00000099937.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0IIK5.1 GenPept UniProtKB/Swiss-Prot:Q0IIK5

Gene LinkOut

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Molecular Biology Databases
Research Materials