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RNASEH2B ribonuclease H2 subunit B [ Bos taurus (domestic cattle) ]

Gene ID: 509258, updated on 18-Aug-2024

Summary

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Official Symbol
RNASEH2Bprovided by VGNC
Official Full Name
ribonuclease H2 subunit Bprovided by VGNC
Primary source
VGNC:VGNC:107254
See related
Ensembl:ENSBTAG00000020149
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 12 NC_037339.1 (20346942..20423424)

Chromosome 12 - NC_037339.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112449044 Neighboring gene uncharacterized LOC132346742 Neighboring gene microRNA mir-10177 Neighboring gene deleted in lymphocytic leukemia 7 Neighboring gene U11/U12 small nuclear ribonucleoprotein 35 kDa protein-like Neighboring gene guanylate cyclase soluble subunit beta-2-like Neighboring gene chromosome 12 C13orf42 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037339.1 Chromosome 12 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribonucleotide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonuclease H2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribonuclease H2 subunit B
Names
RNase H2 subunit B
ribonuclease HI subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166566.1 → NP_001160038.1  ribonuclease H2 subunit B

    See identical proteins and their annotated locations for NP_001160038.1

    Status: VALIDATED

    Source sequence(s)
    BC103280, EV626296, EV706077
    UniProtKB/Swiss-Prot
    Q3ZBI3
    UniProtKB/TrEMBL
    A0A3Q1M3Z6
    Related
    ENSBTAP00000091244.1, ENSBTAT00000104970.1
    Conserved Domains (1) summary
    cd09270
    Location:17 → 302
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037339.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    20346942..20423424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024999830.2 → XP_024855598.1  ribonuclease H2 subunit B isoform X6

    UniProtKB/TrEMBL
    A0A3Q1MC88, A0AAA9S928
    Related
    ENSBTAP00000066367.2, ENSBTAT00000077051.2
    Conserved Domains (1) summary
    pfam09468
    Location:17 → 227
    RNase_H2-Ydr279; Ydr279p protein family (RNase H2 complex component)

  2. XM_010810682.3 → XP_010808984.1  ribonuclease H2 subunit B isoform X1

    UniProtKB/TrEMBL
    A0AAA9S928
    Conserved Domains (1) summary
    cd09270
    Location:17 → 299
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  3. XM_059892015.1 → XP_059747998.1  ribonuclease H2 subunit B isoform X5

    UniProtKB/TrEMBL
    A0AAA9S928

  4. XM_059892014.1 → XP_059747997.1  ribonuclease H2 subunit B isoform X3

    UniProtKB/TrEMBL
    A0AAF6Z7G4

  5. XM_015473765.2 → XP_015329251.1  ribonuclease H2 subunit B isoform X3

    UniProtKB/TrEMBL
    A0AAF6Z7G4
    Conserved Domains (1) summary
    pfam09468
    Location:3 → 271
    RNase_H2-Ydr279; Ydr279p protein family (RNase H2 complex component)

  6. XM_024999826.2 → XP_024855594.1  ribonuclease H2 subunit B isoform X3

    UniProtKB/TrEMBL
    A0AAF6Z7G4
    Conserved Domains (1) summary
    pfam09468
    Location:3 → 271
    RNase_H2-Ydr279; Ydr279p protein family (RNase H2 complex component)

  7. XM_010810688.4 → XP_010808990.1  ribonuclease H2 subunit B isoform X4

    UniProtKB/TrEMBL
    A0AAF6Z7G4
    Conserved Domains (1) summary
    cd09270
    Location:7 → 264
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  8. XM_059892013.1 → XP_059747996.1  ribonuclease H2 subunit B isoform X2

    UniProtKB/TrEMBL
    A0AAA9S928
    Related
    ENSBTAP00000081791.1, ENSBTAT00000099297.1

  9. XM_059892016.1 → XP_059747999.1  ribonuclease H2 subunit B isoform X7

    UniProtKB/TrEMBL
    A0A3Q1M3Z6

  10. XM_024999827.2 → XP_024855595.1  ribonuclease H2 subunit B isoform X3

    UniProtKB/TrEMBL
    A0AAF6Z7G4
    Related
    ENSBTAP00000026838.5, ENSBTAT00000026838.6
    Conserved Domains (1) summary
    pfam09468
    Location:3 → 271
    RNase_H2-Ydr279; Ydr279p protein family (RNase H2 complex component)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3ZBI3.2 GenPept UniProtKB/Swiss-Prot:Q3ZBI3

Gene LinkOut

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Research Materials