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NCDN neurochondrin [ Bos taurus (cattle) ]

Gene ID: 505994, updated on 6-Jun-2024

Summary

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Official Symbol
NCDNprovided by VGNC
Official Full Name
neurochondrinprovided by VGNC
Primary source
VGNC:VGNC:31910
See related
BGD:BT17745; Ensembl:ENSBTAG00000016696
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See NCDN in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (110202070..110210878, complement)

Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit beta 2 Neighboring gene transcription factor AP-2 epsilon Neighboring gene thioredoxin, mitochondrial-like Neighboring gene KIAA0319 like Neighboring gene zinc finger MYM-type containing 4 Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC128555

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in neuron projection development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neuronal synaptic plasticity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neurochondrin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045931.1 → NP_001039396.1  neurochondrin

    See identical proteins and their annotated locations for NP_001039396.1

    Status: PROVISIONAL

    Source sequence(s)
    BC105450
    UniProtKB/Swiss-Prot
    A1L535, Q2KJ97
    Related
    ENSBTAP00000033145.2, ENSBTAT00000033225.4
    Conserved Domains (1) summary
    pfam05536
    Location:30 → 637
    Neurochondrin; Neurochondrin

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    110202070..110210878 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005204669.5 → XP_005204726.1  neurochondrin isoform X2

    See identical proteins and their annotated locations for XP_005204726.1

    Conserved Domains (1) summary
    pfam05536
    Location:13 → 620
    Neurochondrin; Neurochondrin

  2. XM_005204671.5 → XP_005204728.1  neurochondrin isoform X2

    See identical proteins and their annotated locations for XP_005204728.1

    Conserved Domains (1) summary
    pfam05536
    Location:13 → 620
    Neurochondrin; Neurochondrin

  3. XM_010803582.4 → XP_010801884.1  neurochondrin isoform X1

    See identical proteins and their annotated locations for XP_010801884.1

    UniProtKB/TrEMBL
    A0AAA9T1I0
    Conserved Domains (1) summary
    pfam05536
    Location:40 → 647
    Neurochondrin; Neurochondrin

  4. XM_024986298.2 → XP_024842066.1  neurochondrin isoform X1

    UniProtKB/TrEMBL
    A0AAA9T1I0
    Related
    ENSBTAP00000091570.1, ENSBTAT00000115067.1
    Conserved Domains (1) summary
    pfam05536
    Location:40 → 647
    Neurochondrin; Neurochondrin

  5. XM_005204670.5 → XP_005204727.1  neurochondrin isoform X2

    See identical proteins and their annotated locations for XP_005204727.1

    Conserved Domains (1) summary
    pfam05536
    Location:13 → 620
    Neurochondrin; Neurochondrin
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2KJ97.1 GenPept UniProtKB/Swiss-Prot:Q2KJ97

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials