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Ccdc169 coiled-coil domain containing 169 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499618, updated on 5-Mar-2024

Summary

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Official Symbol
Ccdc169provided by RGD
Official Full Name
coiled-coil domain containing 169provided by RGD
Primary source
RGD:1593170
See related
Ensembl:ENSRNOG00000038095 AllianceGenome:RGD:1593170
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human CCDC169 (coiled-coil domain containing 169). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 36.1) and Brain (RPKM 1.1) See more
Orthologs
human mouse all
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Genomic context

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See Ccdc169 in Genome Data Viewer
Location:
2q26
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (141471762..141501325)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (139321644..139351161)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (144551382..144581044)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485736 Neighboring gene uncharacterized LOC134485916 Neighboring gene spartin Neighboring gene U6 spliceosomal RNA Neighboring gene spermatogenesis and oogenesis specific basic helix-loop-helix 2 Neighboring gene uncharacterized LOC134485918 Neighboring gene doublecortin-like kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 169

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109184.1 → NP_001102654.1  coiled-coil domain-containing protein 169

    See identical proteins and their annotated locations for NP_001102654.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474003
    UniProtKB/TrEMBL
    A0A0G2K3N0, A6JVE7, D4ABE7
    Related
    ENSRNOP00000019018.5, ENSRNOT00000019018.7
    Conserved Domains (1) summary
    pfam15372
    Location:55 → 181
    DUF4600; Domain of unknown function (DUF4600)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    141471762..141501325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006232368.5 → XP_006232430.1  coiled-coil domain-containing protein 169 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K3N0, A0A8I6AE52
    Related
    ENSRNOP00000090646.1
    Conserved Domains (1) summary
    pfam15372
    Location:55 → 181
    DUF4600; Domain of unknown function (DUF4600)

  2. XM_008761003.4 → XP_008759225.1  coiled-coil domain-containing protein 169 isoform X2

    UniProtKB/TrEMBL
    A0A0G2K3N0
    Conserved Domains (1) summary
    pfam15372
    Location:55 → 181
    DUF4600; Domain of unknown function (DUF4600)

  3. XM_039102882.2 → XP_038958810.1  coiled-coil domain-containing protein 169 isoform X4

    Conserved Domains (1) summary
    pfam15372
    Location:55 → 156
    DUF4600; Domain of unknown function (DUF4600)

  4. XM_063282366.1 → XP_063138436.1  coiled-coil domain-containing protein 169 isoform X3

  5. XM_039102884.2 → XP_038958812.1  coiled-coil domain-containing protein 169 isoform X5

    Conserved Domains (1) summary
    pfam15372
    Location:55 → 138
    DUF4600; Domain of unknown function (DUF4600)

  6. XM_039102883.2 → XP_038958811.1  coiled-coil domain-containing protein 169 isoform X4

    Conserved Domains (1) summary
    pfam15372
    Location:55 → 156
    DUF4600; Domain of unknown function (DUF4600)

  7. XM_063282367.1 → XP_063138437.1  coiled-coil domain-containing protein 169 isoform X5

  8. XM_039102886.2 → XP_038958814.1  coiled-coil domain-containing protein 169 isoform X7

    Conserved Domains (1) summary
    pfam15372
    Location:1 → 79
    DUF4600; Domain of unknown function (DUF4600)

  9. XM_039102885.2 → XP_038958813.1  coiled-coil domain-containing protein 169 isoform X6

    UniProtKB/TrEMBL
    A6JVE8
    Conserved Domains (1) summary
    pfam15372
    Location:1 → 99
    DUF4600; Domain of unknown function (DUF4600)

RNA

  1. XR_010063641.1 RNA Sequence

  2. XR_005500341.2 RNA Sequence

  3. XR_010063642.1 RNA Sequence

  4. XR_005500340.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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