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CCDC169 coiled-coil domain containing 169 [ Homo sapiens (human) ]

Gene ID: 728591, updated on 25-Jan-2022

Summary

Official Symbol
CCDC169provided by HGNC
Official Full Name
coiled-coil domain containing 169provided by HGNC
Primary source
HGNC:HGNC:34361
See related
Ensembl:ENSG00000242715 AllianceGenome:HGNC:34361
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C13orf38
Expression
Restricted expression toward testis (RPKM 22.3) See more
Orthologs
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Genomic context

See CCDC169 in Genome Data Viewer
Location:
13q13.3
Exon count:
9
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (36222004..36297814, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (36796141..36871951, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984604 Neighboring gene CCDC169-SOHLH2 readthrough Neighboring gene spermatogenesis and oogenesis specific basic helix-loop-helix 2 Neighboring gene RNA, U6 small nuclear 71, pseudogene Neighboring gene spartin Neighboring gene Sharpr-MPRA regulatory region 3304 Neighboring gene SPART antisense RNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Readthrough CCDC169-SOHLH2

Readthrough gene: CCDC169-SOHLH2, Included gene: SOHLH2

Homology

Clone Names

  • FLJ13506, FLJ29024, FLJ57222

General protein information

Preferred Names
coiled-coil domain-containing protein 169
Names
RP11-251J8.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001144981.3NP_001138453.1  coiled-coil domain-containing protein 169 isoform a

    See identical proteins and their annotated locations for NP_001138453.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes isoform a.
    Source sequence(s)
    AK308999, DB454585, DN999189
    Consensus CDS
    CCDS45028.1
    UniProtKB/Swiss-Prot
    A6NNP5
    Related
    ENSP00000239859.7, ENST00000239859.8
    Conserved Domains (1) summary
    pfam15372
    Location:54181
    DUF4600; Domain of unknown function (DUF4600)
  2. NM_001144982.3NP_001138454.1  coiled-coil domain-containing protein 169 isoform b

    See identical proteins and their annotated locations for NP_001138454.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon near the 5' end, uses a downstream start codon, and uses an alternate 3' exon, compared to variant 1. The resulting isoform (b) has a shorter N-terminus and a distinct C-terminus, compared to isoform a. Variants 2 and 3 encode the same isoform.
    Source sequence(s)
    AA861917, AL139377, AL160392, BC171867, DB454585
    Consensus CDS
    CCDS45027.1
    UniProtKB/Swiss-Prot
    A6NNP5
    Related
    ENSP00000369193.2, ENST00000379864.6
    Conserved Domains (1) summary
    pfam15372
    Location:179
    DUF4600; Domain of unknown function (DUF4600)
  3. NM_001144983.3NP_001138455.1  coiled-coil domain-containing protein 169 isoform b

    See identical proteins and their annotated locations for NP_001138455.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate exon and uses an alternate splice site near the 5' end, uses a downstream start codon, and uses an alternate 3' exon, compared to variant 1. The resulting isoform (b) has a shorter N-terminus and a distinct C-terminus, compared to isoform a. Variants 2 and 3 encode the same isoform.
    Source sequence(s)
    AA861917, AL139377, AL160392, BC171880, DB454585
    Consensus CDS
    CCDS45027.1
    UniProtKB/Swiss-Prot
    A6NNP5
    Related
    ENSP00000425252.1, ENST00000491049.6
    Conserved Domains (1) summary
    pfam15372
    Location:179
    DUF4600; Domain of unknown function (DUF4600)
  4. NM_001144984.3NP_001138456.1  coiled-coil domain-containing protein 169 isoform c

    See identical proteins and their annotated locations for NP_001138456.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two alternate exons in the 5' region, uses a downstream start codon, and uses an alternate 3' exon, compared to variant 1. The resulting isoform (c) has a shorter and distinct N-terminus and a distinct C-terminus, compared to isoform a.
    Source sequence(s)
    AA861917, AL139377, AL160392, BC171874, DB454585
    Consensus CDS
    CCDS53863.1
    UniProtKB/Swiss-Prot
    A6NNP5
    Related
    ENSP00000239860.6, ENST00000239860.10
    Conserved Domains (1) summary
    pfam15372
    Location:681
    DUF4600; Domain of unknown function (DUF4600)
  5. NM_001144985.3NP_001138457.1  coiled-coil domain-containing protein 169 isoform d

    See identical proteins and their annotated locations for NP_001138457.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks an alternate exon near the 5' end and uses a downstream start codon, compared to variant 1. The resulting isoform (d) has a shorter N-terminus, compared to isoform a. Variants 5 and 6 encode the same isoform.
    Source sequence(s)
    AK308999
    Consensus CDS
    CCDS45029.1
    UniProtKB/Swiss-Prot
    A6NNP5
    Related
    ENSP00000427495.1, ENST00000510088.5
    Conserved Domains (1) summary
    pfam15372
    Location:179
    DUF4600; Domain of unknown function (DUF4600)
  6. NM_001144986.3NP_001138458.1  coiled-coil domain-containing protein 169 isoform d

    See identical proteins and their annotated locations for NP_001138458.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) lacks an alternate exon and uses an alternate splice site near the 5' end, and uses a downstream start codon, compared to variant 1. The resulting isoform (d) has a shorter N-terminus, compared to isoform a. Variants 5 and 6 encode the same isoform.
    Source sequence(s)
    AK308999, BC171880, DB454585
    Consensus CDS
    CCDS45029.1
    UniProtKB/Swiss-Prot
    A6NNP5
    Related
    ENSP00000369191.2, ENST00000379862.6
    Conserved Domains (1) summary
    pfam15372
    Location:179
    DUF4600; Domain of unknown function (DUF4600)
  7. NM_001198908.2NP_001185837.1  coiled-coil domain-containing protein 169 isoform e

    See identical proteins and their annotated locations for NP_001185837.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 3' coding region and 3' UTR, compared to variant 1. The resulting isoform (e) has a distinct and longer C-terminus, compared to isoform a.
    Source sequence(s)
    AA861917, AL139377, AL160392, BC146975, DB454585
    Consensus CDS
    CCDS55897.1
    UniProtKB/Swiss-Prot
    A6NNP5
    Related
    ENSP00000426174.1, ENST00000503173.5
    Conserved Domains (1) summary
    pfam15372
    Location:54181
    DUF4600; Domain of unknown function (DUF4600)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    36222004..36297814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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