lmo2 LIM domain only 2 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: lmo2provided by Xenbase
Official Full Name: LIM domain only 2provided by Xenbase
Primary source: Xenbase:XB-GENE-479144
See related: Ensembl:ENSXETG00000042510
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: ttg2; LMO-2; rbtn2; rhom2; xlmo2; rbtnl1; xlmo-2
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	4	NC_030680.2 (15306435..15309658, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	4	NC_030680.1 (7245788..7249005, complement)

Chromosome 4 - NC_030680.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
contributes_to DNA binding	ISS Inferred from Sequence or Structural Similarity more info
enables DNA-binding transcription factor binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables transcription coactivator activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within erythrocyte differentiation	ISS Inferred from Sequence or Structural Similarity more info
involved_in positive regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in nucleus	ISS Inferred from Sequence or Structural Similarity more info
part_of protein-containing complex	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: rhombotin-2

Names: LIM domain only 2 (rhombotin-like 1); LIM domain only protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001011238.2 → NP_001011238.1 rhombotin-2

See identical proteins and their annotated locations for NP_001011238.1

Status: PROVISIONAL

Source sequence(s)

BC087809

UniProtKB/Swiss-Prot

Q5M8V8

Related

ENSXETP00000115892.1, ENSXETT00000119264.1

Conserved Domains (2) summary

cd09384
Location:30 → 85

LIM1_LMO2; The first LIM domain of LMO2 (LIM domain only protein 2)

cd09385
Location:94 → 149

LIM2_LMO2; The second LIM domain of LMO2 (LIM domain only protein 2)