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QKI QKI, KH domain containing RNA binding [ Bos taurus (cattle) ]

Gene ID: 493722, updated on 5-Mar-2024

Summary

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Official Symbol
QKIprovided by VGNC
Official Full Name
QKI, KH domain containing RNA bindingprovided by VGNC
Primary source
VGNC:VGNC:33597
See related
Ensembl:ENSBTAG00000011593
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
BqkI
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (98820543..98980967)

Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107132796 Neighboring gene uncharacterized LOC112448145 Neighboring gene uncharacterized LOC101908046 Neighboring gene uncharacterized LOC101908095

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleotide sequence of complementary DNA encoding for quaking protein of cow, horse and pig. Murata T, et al. DNA Seq, 2005 Aug. PMID 16147890
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KH domain-containing RNA-binding protein QKI
Names
protein quaking
quaking homolog, KH domain RNA binding
quaking protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007817.1 → NP_001007818.1  KH domain-containing RNA-binding protein QKI

    See identical proteins and their annotated locations for NP_001007818.1

    Status: PROVISIONAL

    Source sequence(s)
    AB177986
    UniProtKB/Swiss-Prot
    Q5W9D7
    Related
    ENSBTAP00000048511.3, ENSBTAT00000054202.4
    Conserved Domains (4) summary
    PHA03247
    Location:211 → 314
    PHA03247; large tegument protein UL36; Provisional
    pfam16544
    Location:10 → 66
    STAR_dimer; Homodimerization region of STAR domain protein
    pfam16551
    Location:312 → 341
    Quaking_NLS; Putative nuclear localization signal of quaking
    cd22465
    Location:81 → 183
    KH-I_Hqk; type I K homology (KH) RNA-binding domain found in protein quaking (Hqk) and similar proteins

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    98820543..98980967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024996433.2 → XP_024852201.1  KH domain-containing RNA-binding protein QKI isoform X4

    Related
    ENSBTAP00000083263.1, ENSBTAT00000122459.1
    Conserved Domains (3) summary
    cd02395
    Location:117 → 239
    SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
    pfam16551
    Location:348 → 375
    Quaking_NLS; Putative nuclear localization signal of quaking
    pfam16544
    Location:10 → 102
    STAR_dimer; Homodimerisation region of STAR domain protein

  2. XM_024996431.2 → XP_024852199.1  KH domain-containing RNA-binding protein QKI isoform X5

    Related
    ENSBTAP00000067509.2, ENSBTAT00000069603.2
    Conserved Domains (3) summary
    PRK14951
    Location:210 → 281
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    pfam16544
    Location:10 → 66
    STAR_dimer; Homodimerization region of STAR domain protein
    cd22465
    Location:81 → 183
    KH-I_Hqk; type I K homology (KH) RNA-binding domain found in protein quaking (Hqk) and similar proteins

  3. XM_024996434.2 → XP_024852202.1  KH domain-containing RNA-binding protein QKI isoform X6

    UniProtKB/TrEMBL
    A0A3Q1MA86
    Conserved Domains (3) summary
    PRK14951
    Location:210 → 281
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    pfam16544
    Location:10 → 66
    STAR_dimer; Homodimerization region of STAR domain protein
    cd22465
    Location:81 → 183
    KH-I_Hqk; type I K homology (KH) RNA-binding domain found in protein quaking (Hqk) and similar proteins

  4. XM_024996432.2 → XP_024852200.1  KH domain-containing RNA-binding protein QKI isoform X2

    Conserved Domains (3) summary
    PRK14950
    Location:195 → 289
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    pfam16544
    Location:10 → 66
    STAR_dimer; Homodimerization region of STAR domain protein
    cd22465
    Location:81 → 183
    KH-I_Hqk; type I K homology (KH) RNA-binding domain found in protein quaking (Hqk) and similar proteins

  5. XM_024996430.2 → XP_024852198.1  KH domain-containing RNA-binding protein QKI isoform X1

    Conserved Domains (4) summary
    PRK14950
    Location:195 → 305
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    pfam16544
    Location:10 → 66
    STAR_dimer; Homodimerization region of STAR domain protein
    pfam16551
    Location:304 → 333
    Quaking_NLS; Putative nuclear localization signal of quaking
    cd22465
    Location:81 → 183
    KH-I_Hqk; type I K homology (KH) RNA-binding domain found in protein quaking (Hqk) and similar proteins

  6. XM_059889596.1 → XP_059745579.1  KH domain-containing RNA-binding protein QKI isoform X3

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5W9D7.1 GenPept UniProtKB/Swiss-Prot:Q5W9D7

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